Plant FIBer expression Database

Potri.001G387100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G78680 500 / 2e-178 ATGGH2 gamma-glutamyl hydrolase 2 (.1.2)
AT1G78660 489 / 4e-174 ATGGH1 gamma-glutamyl hydrolase 1 (.1.2.3)
AT1G78670 456 / 1e-160 ATGGH3 gamma-glutamyl hydrolase 3 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G026800
[exp]
775 / 0 AT1G78680 501 / 8e-179 gamma-glutamyl hydrolase 2 (.1.2)
Potri.011G107600
[exp]
681 / 0 AT1G78680 489 / 5e-174 gamma-glutamyl hydrolase 2 (.1.2)
Potri.012G110400
[exp]
654 / 0 AT1G78680 478 / 1e-168 gamma-glutamyl hydrolase 2 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042847
[exp]
553 / 0 AT1G78680 481 / 7e-171 gamma-glutamyl hydrolase 2 (.1.2)
Lus10028143
[exp]
551 / 0 AT1G78680 477 / 4e-169 gamma-glutamyl hydrolase 2 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0014 Glutaminase_I PF07722 Peptidase_C26 Peptidase C26
Representative CDS sequence
>Potri.001G387100.1 pacid=42792338 polypeptide=Potri.001G387100.1.p locus=Potri.001G387100 ID=Potri.001G387100.1.v4.1 annot-version=v4.1
ATGCCGTCCCACTTCCTCTCTAATTCCCCTTCTACCCCTACAACCAAGGCCTCCGATCGCCAAAACGACACCTCCGTTTCTCTCCCCTCAACCTCCACCT
CATCTTCTATTTCCCCAGATATGTGGAATTACCTTTGGATCCCTTTCTTAATCTCGCTCTCTAAAGAGCTAACCCTAGCTCGATCAGCAACAGCTACAAC
TTCTCCTTCGATTCTCCTCCCGAGTCAACTCGCCGATGACTCGCCTTCCGCGCCTAAGTGTCCGGCCCCCGACACAAATCTGAATTACCGTCCGGTGATT
GGAATTTTGAGTCATCCGGGGGACGGTGCCTCCGGGAGGCTTAATAACGCGACGAACGCTTCGTATATTGCGGCGTCGTACGTGAAGTTTGTTGAATCAG
CTGGTGCTAGGATTATTCCATTGATTTATAACGAGCCAAGAGAGATTCTTTTTGAGAAGCTCAATCTGGTAAATGGAGTGCTCTTTACTGGAGGTTGGGC
TAAAACTGGTTTGTACTTCGACACTGCGAAGGCAATTTTCAAGGAAGTTTTAGCAAGGAATGATGCAGGCGTCCATTTCCCAGTGTATGCCATCTGCTTA
GGCTTTGAAATTCTGACAATGATCATTAGTGAGGACAATCAAATTCTGGAAACATATAATGCAACTGATCAGGCTTCTACTCTTCAATTTATGGAAAACA
TAAGTATCGAAGGAACTGTGTTTCAGAGATTTCCTCCAGTTTTGCTTAAAAAGTTGAGTACAGATTGCCTAGTCATGCAAAACCATCATTATGGCATCTC
ACCACAACGGTTTCAGGGAAATGAACATCTATCTAGTTTCTTTGAGATCCTGACTAATAGTGCAGACGAAGATAACCAGGTTTATGTCTCCACTGTACAA
GCACGCAACTATCCTGTGACTGCCTTCCAATGGCATCCCGAGAAAAATGCTTTTGAATGGGGGTTATCAATGATTCCACACTCAGAGGATGCCATTCAAG
TGACCCAACATGTTGCCAACTTCTTTGTTAGTGAAGCTAGAAAGTCCTTGAACAGGCCACCTGCTCGGAAGGTACTTGACAATTTAATTTACAATTACAG
TCCCACATATTGTGGGAAAGCTGGGAAGGGATATGATGAAGTTTACATCTTCGCAGAACCAGAAACACCAAACAATACGAGGTGTGCGCATGGTAATTGT
CATGGACGTGTGAAATTATAA
AA sequence
>Potri.001G387100.1 pacid=42792338 polypeptide=Potri.001G387100.1.p locus=Potri.001G387100 ID=Potri.001G387100.1.v4.1 annot-version=v4.1
MPSHFLSNSPSTPTTKASDRQNDTSVSLPSTSTSSSISPDMWNYLWIPFLISLSKELTLARSATATTSPSILLPSQLADDSPSAPKCPAPDTNLNYRPVI
GILSHPGDGASGRLNNATNASYIAASYVKFVESAGARIIPLIYNEPREILFEKLNLVNGVLFTGGWAKTGLYFDTAKAIFKEVLARNDAGVHFPVYAICL
GFEILTMIISEDNQILETYNATDQASTLQFMENISIEGTVFQRFPPVLLKKLSTDCLVMQNHHYGISPQRFQGNEHLSSFFEILTNSADEDNQVYVSTVQ
ARNYPVTAFQWHPEKNAFEWGLSMIPHSEDAIQVTQHVANFFVSEARKSLNRPPARKVLDNLIYNYSPTYCGKAGKGYDEVYIFAEPETPNNTRCAHGNC
HGRVKL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G78680 ATGGH2 gamma-glutamyl hydrolase 2 (.1... Potri.001G387100
[exp]
0 1
AT1G78680 ATGGH2 gamma-glutamyl hydrolase 2 (.1... Potri.003G026800
[exp]
1.00 0.9010
AT4G00500 alpha/beta-Hydrolases superfam... Potri.014G083600
[exp]
8.24 0.7409
AT3G20420 RTL2, ATRTL2 RNASEIII-LIKE 2, RNAse THREE-l... Potri.011G086700
[exp]
9.74 0.6799
AT1G12930 ARM repeat superfamily protein... Potri.014G141100
[exp]
14.14 0.7307
AT1G43245 SET domain-containing protein ... Potri.005G193500
[exp]
14.49 0.7163 SDG954
AT3G21175 GATA GATA24, TIFY2B,... ZIM LIKE 1, GATA TRANSCRIPTION... Potri.005G152500
[exp]
18.16 0.6911
AT1G53040 Protein of unknown function (D... Potri.011G119300
[exp]
19.59 0.7192
AT3G42670 CLSY1, CLSY, CH... CLASSY 1, CLASSY1, chromatin r... Potri.010G183832
[exp]
19.67 0.7324
AT4G34440 AtPERK5 proline-rich extensin-like rec... Potri.009G115200
[exp]
34.39 0.6315
AT3G28430 unknown protein Potri.006G073600
[exp]
34.46 0.6776

Potri.001G387100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.