Plant FIBer expression Database

Potri.001G387300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G78650 330 / 8e-108 POLD3 DNA-directed DNA polymerases (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013748
[exp]
345 / 2e-113 AT1G78650 303 / 4e-97 DNA-directed DNA polymerases (.1)
Lus10039192
[exp]
341 / 8e-112 AT1G78650 288 / 2e-91 DNA-directed DNA polymerases (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0123 HTH PF09507 CDC27 DNA polymerase subunit Cdc27
Representative CDS sequence
>Potri.001G387300.1 pacid=42790011 polypeptide=Potri.001G387300.1.p locus=Potri.001G387300 ID=Potri.001G387300.1.v4.1 annot-version=v4.1
ATGTCCCAAATGGAAACCCTAGGCATTCTCGATGAAATTGAAGTTCTTGTCTCTGATAAACTCCAAGTGGTTTCATACAAGTGGTTGAGTCGAAATTTCA
TGGTTTCATCGAATGCTGCAAAAAGGTTGCTTCAAGAATTTGTTAACACACGCGGAAGTGGATTCGAAGTAGTATACACTCTATCCGGTTGGTTAAAGAA
CAACCCTTCAAGTTACCATATAAGGCTTGTTTCCGGTCCCAAACTTGAAGAAGCTAAACAAGAATTCAATGGCAATTGCTCAGTTCAGGTATATAGTGTT
CAAGCTTGCATCCCAAAAGATCCAGCTGCACTTTGGAATGCTGAATTTGTTCAGGCAGAAGAGCTCTTCAAGCAATCCTTCACAGTTGATAATTGCTTAA
GAGATAACAGATTTTGTGGGATTCTTAATTCCTTTGTTAAGTACAATTGTGATGGACCTGCTGCAACCAAAAGTATGGAAATCCCAGTAATTCAAGTGTG
TCAAACTATTACAGCTCCACCATCTAAGCAAACCAAAGTTCAGCAAAGCCCAAAGGTTGGTCCTCCATCTCCCAATCTGGTGAACAGTGTCAAAAGTGAA
AGGAATGGAACAGGAGTTCGTGATCTGGCTACCAAGCAGACTGTGGATGAAGAAAAGGTTTCTCTCTTGCCTGCCAATAAGAAGAAAGGCCAGAGTGATA
AAACCTCTTCTGGAAATGGAGGTTCGTTGGCAAATTTGTGGGGTCGTGCATCTGCCAAGTCAAAGCCATCTAGTGCACAAGCTGATAATGATAAGCACAT
TCCAAATCCTACTGTGAGTGCAGAAGCTCAAATTTCTGCTTGTGAAGAAATTGAAATTGGGAGCAGTGATGATGAGGCTCAGGGTGTGAATTTTAAGCGA
ACTTCTAATGGGGATAGCAGTAGAAAAAGGAGGGTAGTTTTAGATTATTCCGATGATGAGTTTGAAGATGCAGTCAATCTAGCATCACCAGAACTTCCAA
AGGGCCAAAGCAGTACAGCCTTGGTTTTGGAGAAGCCCCACTTCAAGAAGCAAGCAGAAGATAAACCAGTGATCAAGGTAGAGAAATCAACTGAAGGAGC
ACCTAATCAGTTGTTGAGAGATGATTCTTCAGTTGGAGAAGGCATTGACTCTAAAACTTCCTCTTTGGAGAAGATCCAGAGTGACTTCACCTTCTGTGAT
GCTCAGAAGGATACGGCTGCTGGTGCTGCTCCAAACTCCCCCAAAAGGAGAAAAGTGCTAAAGACACGGATTGATGAGCGTGGAAGAGAAGTAACTGAGG
TAGTCTGGGAAGGGGAGGAGACAGAAACTAAGAAAGTTGAGTCACAGGATTCGAAAAAGAAAGCAGAAAATACTGCAGTTACAAATACTGTTAACAACAG
GGCACCTCTGACTAAGAAGTCTCCAGCAGCAGGAAACGGTGCTCCGTCTAATCCAGGAAGCAAAGCAGGGAACAAGAAGGGAGGGAACAAGGACCCTAAA
CAAGGCAACATTCTATCATTCTTCAAGAGGGTTTGA
AA sequence
>Potri.001G387300.1 pacid=42790011 polypeptide=Potri.001G387300.1.p locus=Potri.001G387300 ID=Potri.001G387300.1.v4.1 annot-version=v4.1
MSQMETLGILDEIEVLVSDKLQVVSYKWLSRNFMVSSNAAKRLLQEFVNTRGSGFEVVYTLSGWLKNNPSSYHIRLVSGPKLEEAKQEFNGNCSVQVYSV
QACIPKDPAALWNAEFVQAEELFKQSFTVDNCLRDNRFCGILNSFVKYNCDGPAATKSMEIPVIQVCQTITAPPSKQTKVQQSPKVGPPSPNLVNSVKSE
RNGTGVRDLATKQTVDEEKVSLLPANKKKGQSDKTSSGNGGSLANLWGRASAKSKPSSAQADNDKHIPNPTVSAEAQISACEEIEIGSSDDEAQGVNFKR
TSNGDSSRKRRVVLDYSDDEFEDAVNLASPELPKGQSSTALVLEKPHFKKQAEDKPVIKVEKSTEGAPNQLLRDDSSVGEGIDSKTSSLEKIQSDFTFCD
AQKDTAAGAAPNSPKRRKVLKTRIDERGREVTEVVWEGEETETKKVESQDSKKKAENTAVTNTVNNRAPLTKKSPAAGNGAPSNPGSKAGNKKGGNKDPK
QGNILSFFKRV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G78650 POLD3 DNA-directed DNA polymerases (... Potri.001G387300
[exp]
0 1
AT2G32170 S-adenosyl-L-methionine-depend... Potri.016G021900
[exp]
7.87 0.8836
AT3G55010 EMB2818, ATPURM... EMBRYO DEFECTIVE 2818, phospho... Potri.014G123000
[exp]
12.24 0.8507
AT2G32170 S-adenosyl-L-methionine-depend... Potri.016G021400
[exp]
18.70 0.8704
AT4G03510 ATRMA1, RMA1 RING membrane-anchor 1 (.1.2) Potri.019G100800
[exp]
28.93 0.8792 Pt-RMA1.1
AT3G21070 NADK1, ATNADK-1 NAD kinase 1 (.1.2) Potri.001G256100
[exp]
35.35 0.8767
AT5G50860 Protein kinase superfamily pro... Potri.012G103900
[exp]
51.84 0.8125
AT3G18770 Autophagy-related protein 13 (... Potri.001G309800
[exp]
74.89 0.8453
Potri.010G008009
[exp]
89.91 0.8420
AT3G12130 C3HZnF KH domain-containing protein /... Potri.006G191900
[exp]
91.62 0.8333
AT5G64290 DCT, DIT2.1 dicarboxylate transport 2.1 (.... Potri.017G050500
[exp]
95.79 0.8413

Potri.001G387300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.