Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53400 182 / 4e-61 Ubiquitin domain-containing protein (.1) AT5G45740 164 / 7e-54 Ubiquitin domain-containing protein (.1) AT1G16960 148 / 1e-47 Ubiquitin domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G107700 [exp] 186 / 2e-62 AT1G53400 172 / 2e-56 Ubiquitin domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015233 [exp] 173 / 2e-57 AT1G53400 199 / 1e-67 Ubiquitin domain-containing protein (.1) Lus10029264 [exp] 169 / 1e-55 AT1G53400 192 / 6e-65 Ubiquitin domain-containing protein (.1) Lus10007315 [exp] 168 / 2e-55 AT1G53400 194 / 8e-66 Ubiquitin domain-containing protein (.1) Lus10005423 [exp] 139 / 4e-44 AT1G53400 165 / 2e-54 Ubiquitin domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF16455 [poplar] [flax] UBD Ubiquitin-binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G387400.1 pacid=42791073 polypeptide=Potri.001G387400.1.p locus=Potri.001G387400 ID=Potri.001G387400.1.v4.1 annot-version=v4.1 ATGGGATGTGCTGGATCCTCACAAGCCAAAGCAGACGGGAGTGCTAAGAAAATACGGAAGCCAAAACCTTGGAAGCATCCTCAGCCTATTACAAAGTCTC AGCTTTTACAGATGCGTGAGGAGTTTTGGGATACTTCGCCTCACTATGGTGGAAGGAAAGAGATTTGGGATGCTCTTCAAGCTGCTGCCGAAGCTGAATT ATCCCTTGCACAAGCAATTGTGGACAGTGCTGGTGTCATCATTCAAAATGCCGATTTGACAGTATGCTATGATGAAAGAGGTGCAAAGTATGAACTACCC AAGTATGTTTTGAGTGAGCCAACAAATTTGATCCGAGAAACTTAA
AA sequence Show only first row Show all	>Potri.001G387400.1 pacid=42791073 polypeptide=Potri.001G387400.1.p locus=Potri.001G387400 ID=Potri.001G387400.1.v4.1 annot-version=v4.1 MGCAGSSQAKADGSAKKIRKPKPWKHPQPITKSQLLQMREEFWDTSPHYGGRKEIWDALQAAAEAELSLAQAIVDSAGVIIQNADLTVCYDERGAKYELP KYVLSEPTNLIRET

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53400			Ubiquitin domain-containing pr...		Potri.001G387400 [exp]	0	1
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Potri.001G226904 [exp]	7.48	0.8641
AT2G41760			unknown protein		Potri.006G051500 [exp]	9.27	0.8737
AT2G42070		ATNUDX23, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.016G045300 [exp]	14.49	0.7899
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.008G180400 [exp]	18.00	0.8360
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Potri.001G238500 [exp]	22.44	0.8132
AT3G14680		CYP72A14	"cytochrome P450, family 72, s...		Potri.011G101750 [exp]	22.71	0.7679
AT5G03890			unknown protein		Potri.012G022300 [exp]	22.95	0.8252
AT1G08370		DCP1, ATDCP1	decapping 1 (.1)		Potri.009G160200 [exp]	26.70	0.8136
AT2G44160		MTHFR2	methylenetetrahydrofolate redu...		Potri.017G000300 [exp]	28.28	0.8474	Pt-MTHFR1.1,MTHFR2
					Potri.006G056101 [exp]	28.72	0.8512

Compare expression of checked genes

Potri.001G387400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.