Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14860 533 / 0 NHL domain-containing protein (.1.2) AT1G70280 244 / 7e-74 NHL domain-containing protein (.1.2) AT1G23880 245 / 1e-73 NHL domain-containing protein (.1) AT5G14890 206 / 8e-58 NHL domain-containing protein (.1) AT1G23890 149 / 4e-41 NHL domain-containing protein (.1.2) AT1G56500 49 / 1e-05 haloacid dehalogenase-like hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G107800 [exp] 720 / 0 AT3G14860 553 / 0.0 NHL domain-containing protein (.1.2) Potri.008G147700 [exp] 259 / 7e-80 AT1G70280 568 / 0.0 NHL domain-containing protein (.1.2) Potri.010G094200 [exp] 254 / 8e-78 AT1G70280 511 / 5e-179 NHL domain-containing protein (.1.2) Potri.016G092200 [exp] 237 / 4e-71 AT1G70280 465 / 3e-160 NHL domain-containing protein (.1.2) Potri.017G129500 [exp] 140 / 1e-36 AT1G23890 247 / 3e-78 NHL domain-containing protein (.1.2) Potri.004G087300 [exp] 139 / 5e-36 AT1G23890 261 / 9e-84 NHL domain-containing protein (.1.2) Potri.013G007800 [exp] 56 / 6e-08 AT1G56500 1489 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029176 [exp] 231 / 2e-68 AT1G70280 540 / 0.0 NHL domain-containing protein (.1.2) Lus10014529 [exp] 224 / 2e-66 AT5G14890 355 / 8e-115 NHL domain-containing protein (.1) Lus10032158 [exp] 221 / 1e-65 AT1G70280 342 / 2e-113 NHL domain-containing protein (.1.2) Lus10039421 [exp] 211 / 9e-64 AT1G23880 329 / 1e-110 NHL domain-containing protein (.1) Lus10012989 [exp] 216 / 3e-63 AT1G70280 538 / 0.0 NHL domain-containing protein (.1.2) Lus10030850 [exp] 217 / 2e-62 AT1G23880 464 / 2e-158 NHL domain-containing protein (.1) Lus10039484 [exp] 213 / 7e-62 AT1G70280 423 / 1e-143 NHL domain-containing protein (.1.2) Lus10030849 [exp] 138 / 1e-35 AT1G23890 271 / 7e-88 NHL domain-containing protein (.1.2) Lus10030639 [exp] 97 / 1e-21 AT1G23890 191 / 2e-57 NHL domain-containing protein (.1.2) Lus10030637 [exp] 93 / 5e-20 AT1G70280 244 / 3e-76 NHL domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF01436 [poplar] [flax] NHL NHL repeat
Representative CDS sequence Show only first row Show all	>Potri.001G387500.4 pacid=42792964 polypeptide=Potri.001G387500.4.p locus=Potri.001G387500 ID=Potri.001G387500.4.v4.1 annot-version=v4.1 ATGAGAAGATCGCATTTCTACTCTACTTTTATACTAGCTCTGCTACTTTCTGTGGCTTGTACTTTTCAATTCCAAGCTCATGCTGCTCCTCCAGCACCTT TGATTAAGCACTTGTCTTCTCTTCTCAAATGGACCACCACTGTGGCATCCTCAAAAACACCCCATTCAGATGGGAATGTTCTTCAGTTTGAGGATGGATA CTTAGTTGAGACTGTTGTGGAAGGAAATGCAATGGGAGTGGTTCCTTACAAAATACGCGTTTCTGAGGATGGTGAACTGTATGCTGTCGATGAAGTTAAT AGCAACGTTGTTAAAATCACTCCACCATTGTCACAATATAGTAGGGCAAGATTGGTGGCTGGGTCATTTCAGGGTTACACAGGACATATTGACGGAAAAC CAAATGAGGCTCGTTTTAATCATCCCAGAGGTCTAACCATGGATGATAAAGGGAACATATATGTCGCCGATACTTTGAATCTAGCCATCAGAAAGATTGG AGATGCAGGTGTCACAACCATTGCTGGGGGGAAATCAAATGTTGCAGGTTTTCGAGATGGGCCCAGCGAAGATGCCAAATTCTCAAATGATTTTGATGTG GTGTATCTTCACTCTACCTGTTCTTTGTTAGTTGTCGATAGAGGAAATGCTGCTCTTAGGCAAATCTCGCTTAACCAAGAGGATTGTGATTATCAGTCCA GTTCATTTACTATGACAGATGTGATTATGGTTGTTGGTGCCGTCTTGATTGGATATGCTACATGCATGCTTCAGCAGGGGTTTGGGTCTTCTTTCTTCTC AAGAATGAAACAATCTTCAGAGAGTGAATTTAAAAAGAAATCAAGTAAGGAAAAACCCATTCCTATTATGGAGAACATGAAAGAGGAGCCCAAGTGGCCA TCTTTTGGACAGCTTTTGATTGATCTATCTAAGCTTGCTCTTGAAGCATTGGTTGGTATACTCCTCTGTTTTGTTCCTTCTTGGAACAGACCAGGTGAAG CCAGAACAGGCCTCACCCCTTTGAAAGATTCTCTAACACTGCCTGAAGATAAAGTTGAGCCTCCATCAGTTCAGAGTCAGAGTACTCCTGCTCCTGTATC TGAAAGTCGCCAGGTCCATACTCCAACTACAAGTGATAAATACTTGGAAGGGAAACCACCAAAGATCAAGTCTGCCAGTTTTAAGGATCCTTCTTTGTTA AGCAAGCATTGGTCTTCAAAACGACAAGAATATGCAGGATTCTATGGTTCAGGTGAGGTTCCGTCTCATGGTGAAGCCAGAACAGGCCTCACCCCTTTGA AAGATTCTCTAACACTGCCTGAAGATAAAGTAGAGCCTCCATCAGTTCCGAGGCAGAGTACTCCTGCTCCTGTATCTGAAAGTCGCCAGGGCCATACTCC AACTACAAGTGATAGATACTCGGAAGTGAAACCACCAAAGATCAAGTCTGCCAGTTTTAAGGATCCTTCTTTGTTAAGCAAGCATCGGTCTTCAAAACGA CAAGAATATGCAGAATTCTATGGTTCAGGTGAGGTTCCGTCTCATGGCAGGTCAAAGAATCACAAAGAAAAATCAAGGCATCGCCAACGAGATAAAAGTG GTGAAGTCGTTTTCGGAGCAGTAGGGGCTGAGCCAAAACCTGCTGAGATGAAGCATGTGGACTACGAAAGTCCAAAATTTGAGCATTACAATATCAGAAG CAAGTATGGGCCTGATAGCTCCTACCGATTTTGA
AA sequence Show only first row Show all	>Potri.001G387500.4 pacid=42792964 polypeptide=Potri.001G387500.4.p locus=Potri.001G387500 ID=Potri.001G387500.4.v4.1 annot-version=v4.1 MRRSHFYSTFILALLLSVACTFQFQAHAAPPAPLIKHLSSLLKWTTTVASSKTPHSDGNVLQFEDGYLVETVVEGNAMGVVPYKIRVSEDGELYAVDEVN SNVVKITPPLSQYSRARLVAGSFQGYTGHIDGKPNEARFNHPRGLTMDDKGNIYVADTLNLAIRKIGDAGVTTIAGGKSNVAGFRDGPSEDAKFSNDFDV VYLHSTCSLLVVDRGNAALRQISLNQEDCDYQSSSFTMTDVIMVVGAVLIGYATCMLQQGFGSSFFSRMKQSSESEFKKKSSKEKPIPIMENMKEEPKWP SFGQLLIDLSKLALEALVGILLCFVPSWNRPGEARTGLTPLKDSLTLPEDKVEPPSVQSQSTPAPVSESRQVHTPTTSDKYLEGKPPKIKSASFKDPSLL SKHWSSKRQEYAGFYGSGEVPSHGEARTGLTPLKDSLTLPEDKVEPPSVPRQSTPAPVSESRQGHTPTTSDRYSEVKPPKIKSASFKDPSLLSKHRSSKR QEYAEFYGSGEVPSHGRSKNHKEKSRHRQRDKSGEVVFGAVGAEPKPAEMKHVDYESPKFEHYNIRSKYGPDSSYRF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14860			NHL domain-containing protein ...		Potri.001G387500 [exp]	0	1
AT2G28150			Domain of unknown function (DU...		Potri.009G005800 [exp]	1.41	0.8445
AT1G70310		SPDS2	spermidine synthase 2 (.1)		Potri.010G094600 [exp]	3.46	0.7992	SPDSYN2.2
AT2G29260			NAD(P)-binding Rossmann-fold s...		Potri.001G244900 [exp]	4.89	0.8259
AT5G44450			methyltransferases (.1)		Potri.011G157500 [exp]	11.57	0.7295
AT1G67900			Phototropic-responsive NPH3 fa...		Potri.010G046800 [exp]	13.22	0.7737
AT2G24280			alpha/beta-Hydrolases superfam...		Potri.018G111000 [exp]	15.74	0.8416
AT3G58610			ketol-acid reductoisomerase (....		Potri.004G043700 [exp]	16.97	0.7783	Pt-PGAAIR.3
AT1G11120			unknown protein		Potri.004G037200 [exp]	17.74	0.8254
AT4G32180		ATPANK2	pantothenate kinase 2 (.1.2.3)		Potri.015G077300 [exp]	24.31	0.8312
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Potri.004G144300 [exp]	26.03	0.8227	SQN.2

Compare expression of checked genes

Potri.001G387500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.