Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34250 908 / 0 SecY protein transport family protein (.1.2) AT1G29310 907 / 0 SecY protein transport family protein (.1) AT1G78720 896 / 0 SecY protein transport family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G107900 [exp] 961 / 0 AT2G34250 909 / 0.0 SecY protein transport family protein (.1.2) Potri.011G114900 [exp] 676 / 0 AT1G78720 672 / 0.0 SecY protein transport family protein (.1) Potri.011G114200 [exp] 481 / 7e-170 AT1G78720 474 / 3e-167 SecY protein transport family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010932 [exp] 945 / 0 AT2G34250 910 / 0.0 SecY protein transport family protein (.1.2) Lus10031399 [exp] 945 / 0 AT2G34250 910 / 0.0 SecY protein transport family protein (.1.2) Lus10007313 [exp] 945 / 0 AT2G34250 909 / 0.0 SecY protein transport family protein (.1.2) Lus10029262 [exp] 945 / 0 AT2G34250 908 / 0.0 SecY protein transport family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00344 [poplar] [flax] SecY SecY translocase PF10559 [poplar] [flax] Plug_translocon Plug domain of Sec61p
Representative CDS sequence Show only first row Show all	>Potri.001G387600.4 pacid=42791434 polypeptide=Potri.001G387600.4.p locus=Potri.001G387600 ID=Potri.001G387600.4.v4.1 annot-version=v4.1 ATGGGAGGTGGATTTAGGGTGCTTCACCTTGTCAGACCATTTCTCTCATTTCTTCCCGAAGTTCAGAGTGCTGACAGAAAAATCCCGTTTCGTGAGAAGG TCATATACACTGTGATTGCTCTTTTCATTTTCTTAGTATGCAGTCAACTCCCGTTGTATGGCATTCATTCAACAACCGGTGCGGATCCTTTCTATTGGAT GCGTGTCATTCTTGCTTCGAACCGTGGTACTGTCATGGAACTTGGTATCACTCCAATTGTGACTTCTGGACTAGTGATGCAACTGCTTGCTGGTTCAAAG ATCATTGAAGTGGACAACAACGTGCGTGAAGATCGTGCATTATTGAACGGTGCACAGAAGTTATTGGGTATCTTGATTGCTGTTGGTGAAGCGGTGGCAT ATGTGCTCTCAGGGATGTATGGAAGTGTTGGCCAACTTGGAGTAGGAAATGCCATTCTTATCATCATTCAGCTTTGTTTTGCCGGGATCATTGTGATCTG TTTGGATGAACTTCTCCAGAAAGGATATGGTCTGGGCTCTGGAATTTCTCTTTTCATTGCAACCAATATCTGTGAAAATATTATCTGGAAAGCATTTAGT CCAACCACCATTAATAGTGGGCGAGGTGCTGAATTTGAAGGAGCTGTCATTGCTTTATTCCATCTTCTGATAACTCGAACAGACAAAGTTCGTGCTCTCC GAGAAGCATTTTACCGGCAGAATCTTCCAAATGTGACAAATCTGCTTGCTACAGTGCTTATCTTTCTCATTGTCATCTACTTCCAAGGGTTCCGTGTGGT TTTGCCTGTGAGGTCAAAGAATGCTCGTGGGCAGCAGGGTTCATATCCAATCAAGTTGTTCTACACCTCAAACATGCCCATTATTTTGCAGTCTGCTCTT GTATCTAACCTTTACTTCATCTCTCAGTTGCTGTACAGGAGGTACAGCGGAAACTTCCTTGTGAATCTTTTGGGCAAATGGAAGGAATCTGAATATTCAG GTGGTCAGTTTGTCCCTGTTGGTGGCCTTGCATATTATATCACTGCGCCCTCAAGCTTAGCTGATATGGCAGCAAATCCTTTCCATGCACTTTTCTATTT CGTGTTTATGTTGTCAGCATGTGCCCTCTTCTCAAAAACTTGGATTGAAGTGTCTGGATCATCTGCCAAAGACGTGGCCAAGCAGCTCAAGGAGCAACAA ATGGTTATGCCTGGGCATCGGGAGTCCAACTTACAGAAAGAGTTGAACCGTTACATACCCACTGCTGCAGCTTTCGGAGGTATTTGCATTGGGGCACTGA CAGTATTGGCAGATTTCATGGGAGCTATCGGATCAGGGACAGGAATACTACTTGCAGTTACGATCATTTATCAGTACTTTGAGACCTTTGAAAAGGAGAA GGCTAGTGAACTTGGTTTCTTTGGTTTCTAA
AA sequence Show only first row Show all	>Potri.001G387600.4 pacid=42791434 polypeptide=Potri.001G387600.4.p locus=Potri.001G387600 ID=Potri.001G387600.4.v4.1 annot-version=v4.1 MGGGFRVLHLVRPFLSFLPEVQSADRKIPFREKVIYTVIALFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSK IIEVDNNVREDRALLNGAQKLLGILIAVGEAVAYVLSGMYGSVGQLGVGNAILIIIQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFS PTTINSGRGAEFEGAVIALFHLLITRTDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSAL VSNLYFISQLLYRRYSGNFLVNLLGKWKESEYSGGQFVPVGGLAYYITAPSSLADMAANPFHALFYFVFMLSACALFSKTWIEVSGSSAKDVAKQLKEQQ MVMPGHRESNLQKELNRYIPTAAAFGGICIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKEKASELGFFGF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G34250			SecY protein transport family ...		Potri.001G387600 [exp]	0	1
AT3G47520		pNAD-MDH, MDH	plastidic NAD-dependent malate...		Potri.017G102000 [exp]	2.00	0.8036	NEMDH.1
AT5G23250			Succinyl-CoA ligase, alpha sub...		Potri.012G036200 [exp]	6.08	0.8192
AT1G79010			Alpha-helical ferredoxin (.1)		Potri.009G116000 [exp]	6.48	0.7962
AT3G53110		LOS4	LOW EXPRESSION OF OSMOTICALLY ...		Potri.006G119000 [exp]	7.48	0.7781
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Potri.010G205700 [exp]	8.00	0.7112	Pt-HSP70.5
AT4G32390			Nucleotide-sugar transporter f...		Potri.006G252500 [exp]	9.16	0.7720
AT5G08060			unknown protein		Potri.004G123700 [exp]	10.67	0.7431
AT4G31180			Class II aminoacyl-tRNA and bi...		Potri.006G085400 [exp]	10.95	0.7253
AT5G13430			Ubiquinol-cytochrome C reducta...		Potri.001G067900 [exp]	12.24	0.7766
AT5G47420			Tryptophan RNA-binding attenua...		Potri.001G155900 [exp]	25.25	0.6840

Compare expression of checked genes

Potri.001G387600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.