Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G388801 [exp] 1070 / 0 ND / Potri.001G388200 [exp] 1068 / 0 ND / Potri.001G388450 [exp] 1066 / 0 ND / Potri.001G388600 [exp] 1061 / 0 ND / Potri.001G388100 [exp] 979 / 0 ND / Potri.011G108300 [exp] 750 / 0 ND / Potri.001G388300 [exp] 688 / 0 ND / Potri.001G388900 [exp] 660 / 0 ND / Potri.011G108200 [exp] 653 / 0 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038309 [exp] 566 / 0 ND / Lus10022836 [exp] 545 / 0 ND / Lus10029057 [exp] 488 / 6e-167 ND / Lus10005392 [exp] 462 / 6e-157 ND / Lus10024122 [exp] 459 / 6e-156 ND / Lus10024121 [exp] 436 / 3e-146 ND / Lus10006341 [exp] 362 / 8e-120 ND / Lus10023559 [exp] 362 / 4e-118 ND / Lus10005393 [exp] 343 / 5e-112 ND / Lus10008536 [exp] 331 / 4e-109 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0205 [poplar] [flax] Di-copper PF00264 [poplar] [flax] Tyrosinase Common central domain of tyrosinase CL0205 [poplar] [flax] PF12142 [poplar] [flax] PPO1_DWL Polyphenol oxidase middle domain CL0122 [poplar] [flax] UTRA PF12143 [poplar] [flax] PPO1_KFDV Protein of unknown function (DUF_B2219)
Representative CDS sequence Show only first row Show all	>Potri.001G387900.1 pacid=42788834 polypeptide=Potri.001G387900.1.p locus=Potri.001G387900 ID=Potri.001G387900.1.v4.1 annot-version=v4.1 ATGGCTTCCTTTATCTCTCTTTCCAGTAGCATCCCTTTAGCTGCCTCCTCTTTCTTGCCTTCCTTCCCGAAAACACACCGAGTTTCCAGAGTTAAAAAGC CAAACCGTCCCGATATCCCGATTGTTTCTTGCAAATCAGGCAAGAATGATCATGAACAAAACCCTGCCACCAGAAGAGATGTGCTCATTGGTCTCGGTGG ACTCTATGGAGCAACTAGTCTTAGTGATCCATTTGCCTATGCTAACCCCATTGCACCCCCAGACATAACCCAATGTGAGCTAGTTACCCTGCCAACCGAA AGTGACCCCTCGAACTGTTGCCCTCCAACATCCACAAAGATCAAAAACTTCGAATTCCCTTCTGCGTCCTCCCCAATGCGCATTAGGCCTGCTGCTCATT TAGTTGATAAAGCCTACTTAGCTAAATACGCCAAAGCCATTGCACTGATGAAAAGTCTTCCTGACGATGATCCACGTAGCTTCAAGAGCCAAGCCGACGT TCATTGTGCTTATTGTGATGGTGCTTATCACCAAGCAGGCTTTCCTGATTTAGACCTTCAAATTCACTTCTCGTGGCTCTTCTTTCCCTGGCATAGACTC TATTTATACTACTTCGAAAGAATCTTGGGTAAACTGATTGATGATCCAACTTTCGCTTTGCCTTTCTGGAATTGGGATGCCCCTGCCGGCATGCAAATGC CAGCCATTTTTACTGACCCCAAATCACCACTTTATGACCCCCTTCGCGACGCGAATCACCAACCTCCGACACTGCTTGATCTTAATTACGCGAAAGGAGA TGCGAATCCAGACCCTGCAAAAGCAGGGGAATTGTATGCAAGCAATCTTAACGTAATGTACAGGCAAATGGTGTCCGGTGCAACGAAGCCTACTCTCTTT TTTGGAAAACCATATCGTGCTGGTGATGATCCAAGTCCTGGAATGGGAACAATTGAGACCACCCCACACACTCAGATTCACTACTGGACCGGCGACCCCA ATCAAACTAACGGGGAAAATATGGGCAATTTCTACTCAGCAGGGAGAGATCCCATATTTTATTGTCATCACTCGAACGTCGACCGAATGTGGGACTTGTG GAAGAAAATACCAGGAGGCAAGCGAAAGGATATCGAGGATCCTGATTGGCTTAATTCAGAGTTTCTTTTCTGGGATGAGAATAAAGAGCTGGTTCGAGTA AAGGTTAAAGATACTCTTGACACCAAGAAGCTAAGATATGGCTTTCAAGATGTTCCTATTCCTTGGCTGAAAGCTAGAGCAACACCAAAATTTACAAGGC AGGAAAAATCACGTCGTTCAGCTAAAAAAAGCGTTGTATTAACACCAATTAGTGCATTCCCTGTTGTCTTGGATAAAGTCATAAGTGTGGAGGTTTCCAG GCCAAAGAAATCAAGAAGCGCGACGGAGAAAGAAGATGAAGATGAAGTTTTGGTTATTGAAGGGATTGAGTATGAAGAAAATCAATTAATTAAGTTCGAT GTCCTCGTCAACGATGAACCTGATTCACCTGGTGGACCAGACAAGTCCGAGTTTGCAGGAAGTTTCATCAATGTGCCTCACAAGCATGCAAAAAAATCAA AGACAACTATGGTATTGGGGATTACAGGATTGTTGGAAGATCTGGAAGCTGAAGGAGATGATACCCTTGTGGTGACTTTAGTGCCTCGGACTGGTGGTGA TTCTGTTACTGTTGCTAATGTCAAGATTGAGTTTGTCGCTGACTGA
AA sequence Show only first row Show all	>Potri.001G387900.1 pacid=42788834 polypeptide=Potri.001G387900.1.p locus=Potri.001G387900 ID=Potri.001G387900.1.v4.1 annot-version=v4.1 MASFISLSSSIPLAASSFLPSFPKTHRVSRVKKPNRPDIPIVSCKSGKNDHEQNPATRRDVLIGLGGLYGATSLSDPFAYANPIAPPDITQCELVTLPTE SDPSNCCPPTSTKIKNFEFPSASSPMRIRPAAHLVDKAYLAKYAKAIALMKSLPDDDPRSFKSQADVHCAYCDGAYHQAGFPDLDLQIHFSWLFFPWHRL YLYYFERILGKLIDDPTFALPFWNWDAPAGMQMPAIFTDPKSPLYDPLRDANHQPPTLLDLNYAKGDANPDPAKAGELYASNLNVMYRQMVSGATKPTLF FGKPYRAGDDPSPGMGTIETTPHTQIHYWTGDPNQTNGENMGNFYSAGRDPIFYCHHSNVDRMWDLWKKIPGGKRKDIEDPDWLNSEFLFWDENKELVRV KVKDTLDTKKLRYGFQDVPIPWLKARATPKFTRQEKSRRSAKKSVVLTPISAFPVVLDKVISVEVSRPKKSRSATEKEDEDEVLVIEGIEYEENQLIKFD VLVNDEPDSPGGPDKSEFAGSFINVPHKHAKKSKTTMVLGITGLLEDLEAEGDDTLVVTLVPRTGGDSVTVANVKIEFVAD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.001G387900 [exp]	0	1
					Potri.001G388100 [exp]	4.12	0.9638
AT1G66870			Carbohydrate-binding X8 domain...		Potri.014G114500 [exp]	6.32	0.9629
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Potri.009G152200 [exp]	10.19	0.9748
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Potri.009G151900 [exp]	15.16	0.9726
AT4G13440			Calcium-binding EF-hand family...		Potri.019G029100 [exp]	15.68	0.9365
AT1G67050			unknown protein		Potri.017G115801 [exp]	16.73	0.9291
AT5G35110			unknown protein		Potri.018G113901 [exp]	18.00	0.9719
AT3G48770			DNA binding;ATP binding (.1)		Potri.015G102301 [exp]	21.49	0.9699
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Potri.009G152300 [exp]	21.54	0.9705
					Potri.002G192050 [exp]	26.38	0.9700

Compare expression of checked genes

Potri.001G387900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.