Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PSCLRR52.53
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27060 468 / 3e-149 AtRLP53 receptor like protein 53 (.1) AT1G45616 461 / 3e-146 AtRLP6 receptor like protein 6 (.1) AT1G47890 457 / 2e-144 AtRLP7 receptor like protein 7 (.1) AT3G11080 446 / 4e-141 AtRLP35 receptor like protein 35 (.1) AT3G11010 444 / 5e-141 AtRLP34 receptor like protein 34 (.1) AT3G05660 441 / 4e-140 AtRLP33 receptor like protein 33 (.1) AT2G15080 444 / 6e-140 AtRLP19 receptor like protein 19 (.1.2) AT3G05650 430 / 7e-136 AtRLP32 receptor like protein 32 (.1) AT4G13920 419 / 2e-131 AtRLP50 receptor like protein 50 (.1) AT2G33060 412 / 1e-129 AtRLP27 receptor like protein 27 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G127101 [exp] 582 / 0 AT1G47890 580 / 0.0 receptor like protein 7 (.1) Potri.016G127000 [exp] 577 / 0 AT1G47890 588 / 0.0 receptor like protein 7 (.1) Potri.016G126900 [exp] 575 / 0 AT1G45616 510 / 5e-165 receptor like protein 6 (.1) Potri.011G105150 [exp] 574 / 0 AT1G45616 405 / 3e-125 receptor like protein 6 (.1) Potri.011G055000 [exp] 550 / 0 AT1G45616 456 / 3e-145 receptor like protein 6 (.1) Potri.001G437700 [exp] 540 / 1e-176 AT1G47890 397 / 4e-122 receptor like protein 7 (.1) Potri.009G112061 [exp] 541 / 2e-176 AT1G45616 405 / 1e-124 receptor like protein 6 (.1) Potri.T125004 [exp] 541 / 7e-176 AT1G45616 384 / 9e-117 receptor like protein 6 (.1) Potri.012G028101 [exp] 536 / 1e-174 AT3G11080 400 / 1e-123 receptor like protein 35 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003389 [exp] 425 / 2e-132 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10003387 [exp] 416 / 1e-128 AT1G47890 394 / 3e-120 receptor like protein 7 (.1) Lus10042239 [exp] 415 / 4e-128 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10026415 [exp] 409 / 9e-126 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10006825 [exp] 364 / 1e-109 AT1G47890 377 / 6e-114 receptor like protein 7 (.1) Lus10004310 [exp] 352 / 1e-106 AT2G33060 358 / 6e-111 receptor like protein 27 (.1) Lus10016402 [exp] 315 / 6e-95 AT1G47890 313 / 4e-94 receptor like protein 7 (.1) Lus10004313 [exp] 313 / 7e-93 AT2G33060 335 / 5e-103 receptor like protein 27 (.1) Lus10011039 [exp] 324 / 1e-92 AT3G11010 367 / 5e-110 receptor like protein 34 (.1) Lus10002214 [exp] 293 / 3e-88 AT3G05660 293 / 2e-89 receptor like protein 33 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.001G389100.1 pacid=42789453 polypeptide=Potri.001G389100.1.p locus=Potri.001G389100 ID=Potri.001G389100.1.v4.1 annot-version=v4.1 ATGAGTTGCTCAGGACGGGCTGGTCAAGTCATATTTTGCCTCCTGATATTGATGTTGTATTGTCAACTAACTGTGTCACAATTATGCCCCAAAGATGAAA GCTATGCTTTACTCCAACTTAAGGATGGATTTGAGTATGATGAATCCGCTTCGTTGGATTGCAGCCCTCCTTATCCTAGGATGGCCTCATGGAAATCTGG AACAGATTGCTGTTCGTGGGATGGAGTCGCATGCCATGGGGTCACAGGTCATGTGATCGCTCTTGACCTTAGTTGCAGTGGTCTTAGAGGCAACCTCAGT TCCAACAGCAGTCTCTTTCACCTTTCACACCTTCGGAGACTCAACCTTGCTTTCAATTATTTTAACCGCTCCTCCATTCCACCTGAGTTTGGTATGTTTT CAAGTTTGACACACCTTAACCTTTCTAGCACATGGTTCTCAGGTCAAGTCCCAACTGAAATATCTCACTTGTCCAAATTGATCTCTCTTGATCTTTCTTT GAATGAACCATTGATACTCGAAGCACCAGCCATGAAAATGATTGTCCAAAACCTTACTCTAGTAAGAGAGATTTTTCTTGATTACATAAACATGTCTTCA GTTGATCTTGGTTCCTTGATGAACCTATCTTCTTCATTAACTTCTCTCAGCCTCAATTTATGTGGATTGCAAGGACAATTCCCGGAAAACATTTTCCACC TACCAAACCTCCAGCTCCTGAGTTTATTGTTGAATAGCGATCTATACGGGCGTTTACCTGTGTCCAATTGGAGCAGTTCCCTTGAACTGTTGAAGCTTGG CTCCACAAGTTTCTCAGGAGGATTGCCAGAAATAATTGGCAATCTTGACTCCATCAAGGTGTTGGATCTTGGAAACTGTGCTTTCTACGGATCAGTTCCA GCTTCGCTTGGGAATCTTCAACAGCTCAATCAATTAGATCTTTCGAATAACAACTGGACAGGGCAGATCCCGGATGTTTTCGGCAACCTCAGCAAACTAA ACAGCCTATCCCTTCAAGTCGGTAATTTCAGTGGTATGTTGCCATCATCTGTCTTTAACCTCACTGAACTCTTACGTTTAGACCTGTCTCAAAACCAACT AGAGGGAACTCTTCCTGATCACATATGTGGCCTTGACAATGTTACTTATCTTGACCTATCTTATAACTTGCTCAGTGGCACAATACCATCTTGTTTGTTC GGTCTCCCATCATTGGTCTGGTTTAACCTTAATAATAACCACCTCACTGGAGAACTTGGTGAACATTGGTCAAAGTCTTTGCTAGAAATAAGACTGGAAA GTAACAAGATAAATGGTCTTATTCCACCATCAATCTCTGAATTGGTGAATCTCACCAATTTTGACGTTTCATCAAACAACTTGAGTGGCATTGTGGACTT AAACCTGTTTTCAAACATGAAAAACCTTTGGGGACTTGATCTTTCACACAACAGTCTGTCTGTCGTCACTAATAATAATAGGAACTCAACCTGGCCCCAA TTCTACAAACTGGCATTGTCGTCTTGCAACATAATTGAGTTCCCAGACTTCTTGAAAATTCAAAATCAGCTCAACTTTTTGTCTCTATCCCACAATAGAA TTCATGGAGAAATTCCCAAATGGCTGTCAGCAAAGGGGATGCAGTCTTTACAATATTTGGATCTTTCTCACAACTTTCTGACCATTGTAAACGAACTTCC ACCCAGCTTACAATATCTTGACCTCACTTCCAACTTGCTTCAACAACCATTTCCAATTCTTCCACAATCCATGTACATTCTTTTAATAGCAAATAATAAA CTCACTGGAGAAATCCCACCTTGGATTTGCAATATCACCACCTTCCAGATCATAAACTTATCTAATAATAGTTTGAGTGGCAATATTCCACAGTGCTTGG GGAACTTCAGTACTGAACTATCCGTGTTGAATTTGAGGAGCAACAGCTTCCATGGCACCATTCCAGGATCATTTACAGAGGGAAATAAAATAAGAAGTCT TGATTTGAATGGCAATGAGTTGGAAGGATCGTTACCACTATCCTTAGCTAATTGCAAAATGTTGGAAGTCCTCGATCTGGGAAACAATTACATAAATGAT AGTTTTCCCCTTTGGCTGCAAACTCTTCCGAAGCTACAGGTTCTGGTGCTCCGCTCTAACAGACTACATGGTTCTATAGGCAATCCCACTGCGATATCTC CTTTCTCTAGTCTAAGAATCATTGATCTCTCGCACAATGAGTTCATCGGCCTTCTGCCGACACAGTACATTGCAAATTTTCAAGCTATGAAGAAAGTGGA TGGAGAAGTTAAAGCTACACCAAAGTATATAGGGGAAATATATTATCAGGATTCTATAGTTTTGACGATGAAAGGGACAGAGATTCCAATGGAGAGAATA CTAACTATCTTTACAACCATTGACCTATCAAGCAACCGATTTGAAGGACAGATTCCAAAGGAGGTTGGACTTCTTAGTTCACTCATAGTCCTTAATATTT CAAGAAACAGCGTCACTGGTCAAATACCATCATCACTTGGGAACCTGACAGCACTTGAATCACTGGATCTCTCATCAAATGGGCTTGGTGGAGGCATTCC TTCACAATTAACAAGGCTGACCTTCCTTGCAGTACTAAACCTCTCATATAATCAGCTTGTAGGCCCTATTCCTCATGGCAGTCAATTTGACACCTTTCAG AATGATTCATATGTTGGAAACTTGCGGTTGTGCGGATTTCCGTTATCTGTGAAATGTAGTGGTGATGTGGCACCACAACCCCCACCATTCCAAGAGAAAG AAGATCCTGCAAGCTTATTCAATTGGAAGTTTGCCATGATAGGTTATGGATGTGGGCTGGTGATTGGATTGTCCGTGGGATATATTGTATTCACGACAGG AAAGCCACAATGGTTCGTAAGGAAGGTCGAGGTTGAACAAAAGAAATGGTTAAGAAGACGGACAAAGAGGAATATATAA
AA sequence Show only first row Show all	>Potri.001G389100.1 pacid=42789453 polypeptide=Potri.001G389100.1.p locus=Potri.001G389100 ID=Potri.001G389100.1.v4.1 annot-version=v4.1 MSCSGRAGQVIFCLLILMLYCQLTVSQLCPKDESYALLQLKDGFEYDESASLDCSPPYPRMASWKSGTDCCSWDGVACHGVTGHVIALDLSCSGLRGNLS SNSSLFHLSHLRRLNLAFNYFNRSSIPPEFGMFSSLTHLNLSSTWFSGQVPTEISHLSKLISLDLSLNEPLILEAPAMKMIVQNLTLVREIFLDYINMSS VDLGSLMNLSSSLTSLSLNLCGLQGQFPENIFHLPNLQLLSLLLNSDLYGRLPVSNWSSSLELLKLGSTSFSGGLPEIIGNLDSIKVLDLGNCAFYGSVP ASLGNLQQLNQLDLSNNNWTGQIPDVFGNLSKLNSLSLQVGNFSGMLPSSVFNLTELLRLDLSQNQLEGTLPDHICGLDNVTYLDLSYNLLSGTIPSCLF GLPSLVWFNLNNNHLTGELGEHWSKSLLEIRLESNKINGLIPPSISELVNLTNFDVSSNNLSGIVDLNLFSNMKNLWGLDLSHNSLSVVTNNNRNSTWPQ FYKLALSSCNIIEFPDFLKIQNQLNFLSLSHNRIHGEIPKWLSAKGMQSLQYLDLSHNFLTIVNELPPSLQYLDLTSNLLQQPFPILPQSMYILLIANNK LTGEIPPWICNITTFQIINLSNNSLSGNIPQCLGNFSTELSVLNLRSNSFHGTIPGSFTEGNKIRSLDLNGNELEGSLPLSLANCKMLEVLDLGNNYIND SFPLWLQTLPKLQVLVLRSNRLHGSIGNPTAISPFSSLRIIDLSHNEFIGLLPTQYIANFQAMKKVDGEVKATPKYIGEIYYQDSIVLTMKGTEIPMERI LTIFTTIDLSSNRFEGQIPKEVGLLSSLIVLNISRNSVTGQIPSSLGNLTALESLDLSSNGLGGGIPSQLTRLTFLAVLNLSYNQLVGPIPHGSQFDTFQ NDSYVGNLRLCGFPLSVKCSGDVAPQPPPFQEKEDPASLFNWKFAMIGYGCGLVIGLSVGYIVFTTGKPQWFVRKVEVEQKKWLRRRTKRNI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G27060		AtRLP53	receptor like protein 53 (.1)		Potri.001G389100 [exp]	0	1	PSCLRR52.53
					Potri.016G047700 [exp]	1.00	0.9705
					Potri.001G472101 [exp]	2.00	0.9596
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Potri.006G002600 [exp]	3.00	0.9503
AT2G38870			Serine protease inhibitor, pot...		Potri.006G212200 [exp]	5.65	0.9443
AT3G11680			Aluminium activated malate tra...		Potri.016G070000 [exp]	5.91	0.9309
AT2G02220		ATPSKR1	phytosulfokin receptor 1 (.1)		Potri.017G050600 [exp]	6.70	0.8656
AT5G15290		CASP5	Casparian strip membrane domai...		Potri.012G032300 [exp]	6.92	0.9337
AT5G43580		UPI	UNUSUAL SERINE PROTEASE INHIBI...		Potri.010G075300 [exp]	10.39	0.9127
AT3G09390		ATMT-K, ATMT-1,...	ARABIDOPSIS THALIANA METALLOTH...		Potri.001G041268 [exp]	10.95	0.9265
AT3G09390		ATMT-K, ATMT-1,...	ARABIDOPSIS THALIANA METALLOTH...		Potri.001G040200 [exp]	11.00	0.9213

Compare expression of checked genes

Potri.001G389100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.