Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05680 494 / 2e-173 UGT74E2 Uridine diphosphate glycosyltransferase 74E2 (.1) AT1G05675 487 / 1e-170 UDP-Glycosyltransferase superfamily protein (.1) AT2G31750 462 / 1e-160 UGT74D1 UDP-glucosyl transferase 74D1 (.1) AT2G43820 432 / 1e-148 SGT1, ATSAGT1, GT, UGT74F2 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) AT2G31790 427 / 9e-147 UDP-Glycosyltransferase superfamily protein (.1) AT2G43840 415 / 4e-142 UGT74F1 UDP-glycosyltransferase 74 F1 (.1.2) AT1G24100 382 / 3e-129 UGT74B1 UDP-glucosyl transferase 74B1 (.1) AT4G15480 293 / 7e-94 UGT84A1 UDP-Glycosyltransferase superfamily protein (.1) AT4G15490 284 / 1e-90 UGT84A3 UDP-Glycosyltransferase superfamily protein (.1) AT3G21560 273 / 2e-86 UGT84A2 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G140300 [exp] 556 / 0 AT1G05680 457 / 4e-159 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.017G032300 [exp] 545 / 0 AT1G05675 465 / 6e-162 UDP-Glycosyltransferase superfamily protein (.1) Potri.004G179300 [exp] 530 / 0 AT1G05680 446 / 1e-154 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.017G032700 [exp] 529 / 0 AT1G05680 444 / 6e-154 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.017G032733 [exp] 529 / 0 AT1G05680 444 / 6e-154 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.017G032500 [exp] 523 / 0 AT1G05680 446 / 1e-154 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.007G140700 [exp] 518 / 0 AT1G05680 357 / 2e-120 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.014G175000 [exp] 491 / 7e-172 AT2G43840 411 / 8e-141 UDP-glycosyltransferase 74 F1 (.1.2) Potri.007G140500 [exp] 467 / 2e-162 AT2G43840 463 / 3e-161 UDP-glycosyltransferase 74 F1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008742 [exp] 497 / 4e-174 AT2G43840 478 / 6e-167 UDP-glycosyltransferase 74 F1 (.1.2) Lus10009412 [exp] 446 / 3e-154 AT2G43820 474 / 1e-165 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10010712 [exp] 445 / 7e-154 AT1G24100 462 / 1e-160 UDP-glucosyl transferase 74B1 (.1) Lus10020556 [exp] 444 / 1e-153 AT2G43820 472 / 1e-164 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10006353 [exp] 443 / 8e-153 AT2G43820 398 / 1e-135 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10014148 [exp] 440 / 1e-151 AT2G43840 407 / 2e-139 UDP-glycosyltransferase 74 F1 (.1.2) Lus10024486 [exp] 422 / 1e-144 AT1G05680 389 / 4e-132 Uridine diphosphate glycosyltransferase 74E2 (.1) Lus10006352 [exp] 418 / 4e-143 AT2G43820 414 / 6e-142 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10020559 [exp] 416 / 2e-142 AT2G43820 436 / 3e-150 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10006721 [exp] 412 / 4e-141 AT2G43820 392 / 9e-134 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF04101 [poplar] [flax] Glyco_tran_28_C Glycosyltransferase family 28 C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.001G389200.1 pacid=42790341 polypeptide=Potri.001G389200.1.p locus=Potri.001G389200 ID=Potri.001G389200.1.v4.1 annot-version=v4.1 ATGGAGAGGGAACAAAAAACCAGCAGTGCAAGTCATGTGCTAGTCCTTCCGCTGCCTATACAAGGCCACATAAATCCAATGCTTCAATTCTCTAAGCGTT TAGCTTCAAAAGGCCTCAGGGTCACGCTAATTACCCCCACTTCAATGGGCACCTCCATGCATCAAGACAACGCTTGTTCCATCAACATGGAACCCATTTT TGATGGTTACAAAGAAGGTGAAAGAGCAGCAACCGCAGAGGAATACATCGAGCGTTTCAAGGCCACAATCCCGCAAAGCTTAGCTGAGCTCATCGACAAA AATAGTACCAGCCAATACCCTGCTAAATTCATCATTTATGACTCCATTCTACCATGGGTTCTGGATGTGGCGAAGAGCTGGGGCATAGAAGGAGGTCCGT TTTTCACCCAATCATGCGCGGTTACTGTTTTATATTACCATACACTACAAGGGAGCGCTTTGAAAATTCCTATGGAAGAAAAATCGCCGGTGTCCCTGCC TTCCCTGCCACAGTTGGAGTTCAGTGATCTACCATCCCTTGTTCATGGTCCAGGTTCGTATCCCGGTATTTATGACCTCCTTTTTAGCCAGTTCTCAAAT ATAGATGAAGCGAGCTGGCTCCTCTGGAACACTTTCAATGAACTTGAAGATGAGATTGTCGACTGGATGGCGAGCAAGTGGCCAATCAAGCCAATAGGAC CAACAATTCCGTCAATGTTCTTGGACAAGCGGCTGGAGGACGACAAAGACTATGGTCTCAGCCTCTTCAAGCCAAATTCTGAAACTTGCATGAAATGGTT AGACTCCAAGGAACCAGGCTCAGTTGTTTATGTATCATTTGGCAGCCTCGCTGTTCTGACAGAAGACCAAATGGCAGAATTGGCCTGGGGTCTGAAAAGA AGCAACACTCACTTTCTATGGGTTGTAAGAGAATCAGAAAAGCAAAAGGTACCAGGCAACTTCGTAGAGGAGACAACAGAGATGGGTCTAATCATAACAT GGAGTCCTCAACTAAAGGTCCTGGCTCACAAATCCGTGGGATGCTTCATGACTCATTGTGGGTGGAATTCAACACTTGAGGCTTTGAGCTTGGGAGTGCC AATGGTGGCAATGCCACAGTGGACAGATCAACCATCTAATGCAAAGTTTGTTGCTGATGTTTGGCAAGCAGGGGTTAGAGTAAAGGTAGGTGAAAATGGG ATGGTGACACAAGAAGAGATAGAGAGGTGTATAAGGGAAGTCATGATGGAAGGTGAAAGAAGGGATGAGATCAGAACTCATTCTGAGAAATGGAAGAAAC TAGCCAGAATGGCTATGGATGAAGGTGGAAGCTCTGACAAGAACATTGATGAGTTTGTAGCAAGCTTGAATGCATGCAACTCCAATAGCACCAAGAGTCC TGATCAGAGACCTTAA
AA sequence Show only first row Show all	>Potri.001G389200.1 pacid=42790341 polypeptide=Potri.001G389200.1.p locus=Potri.001G389200 ID=Potri.001G389200.1.v4.1 annot-version=v4.1 MEREQKTSSASHVLVLPLPIQGHINPMLQFSKRLASKGLRVTLITPTSMGTSMHQDNACSINMEPIFDGYKEGERAATAEEYIERFKATIPQSLAELIDK NSTSQYPAKFIIYDSILPWVLDVAKSWGIEGGPFFTQSCAVTVLYYHTLQGSALKIPMEEKSPVSLPSLPQLEFSDLPSLVHGPGSYPGIYDLLFSQFSN IDEASWLLWNTFNELEDEIVDWMASKWPIKPIGPTIPSMFLDKRLEDDKDYGLSLFKPNSETCMKWLDSKEPGSVVYVSFGSLAVLTEDQMAELAWGLKR SNTHFLWVVRESEKQKVPGNFVEETTEMGLIITWSPQLKVLAHKSVGCFMTHCGWNSTLEALSLGVPMVAMPQWTDQPSNAKFVADVWQAGVRVKVGENG MVTQEEIERCIREVMMEGERRDEIRTHSEKWKKLARMAMDEGGSSDKNIDEFVASLNACNSNSTKSPDQRP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Potri.001G389200 [exp]	0	1
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Potri.016G105400 [exp]	3.16	0.9520
AT1G27385			unknown protein		Potri.001G056500 [exp]	4.47	0.9633
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.019G057901 [exp]	6.00	0.9528
AT5G16370		AAE5	acyl activating enzyme 5 (.1)		Potri.019G067800 [exp]	6.00	0.9492
AT1G18210			Calcium-binding EF-hand family...		Potri.014G070700 [exp]	7.48	0.9331
					Potri.011G051000 [exp]	10.34	0.9075
AT2G20920			Protein of unknown function (D...		Potri.009G137600 [exp]	12.60	0.9544
AT3G56330			N2,N2-dimethylguanosine tRNA m...		Potri.013G093500 [exp]	12.64	0.9429
AT2G23840			HNH endonuclease (.1)		Potri.013G059500 [exp]	12.96	0.9404
AT1G10500		ATCPISCA	chloroplast-localized ISCA-lik...		Potri.007G079600 [exp]	12.96	0.9469

Compare expression of checked genes

Potri.001G389200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.