Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78770 911 / 0 APC6 anaphase promoting complex 6 (.1) AT3G04240 74 / 2e-13 SEC secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G16320 62 / 7e-10 CDC27a Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G11540 57 / 4e-08 SPY SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G56290 52 / 1e-06 EMB2790, PEX5, ATPEX5 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1) AT5G63200 51 / 2e-06 tetratricopeptide repeat (TPR)-containing protein (.1) AT3G48150 48 / 2e-05 CDC23, APC8 anaphase-promoting complex subunit 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G108800 [exp] 1057 / 0 AT1G78770 907 / 0.0 anaphase promoting complex 6 (.1) Potri.001G389500 [exp] 320 / 6e-108 AT1G78770 244 / 1e-78 anaphase promoting complex 6 (.1) Potri.018G086300 [exp] 64 / 2e-10 AT2G20000 1146 / 0.0 HOBBIT, CDC27 family protein (.1) Potri.013G051400 [exp] 63 / 3e-10 AT3G04240 1684 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G164000 [exp] 62 / 5e-10 AT2G20000 1098 / 0.0 HOBBIT, CDC27 family protein (.1) Potri.019G025600 [exp] 61 / 1e-09 AT3G04240 1689 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G208900 [exp] 55 / 1e-07 AT3G11540 1506 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.016G075700 [exp] 53 / 4e-07 AT3G11540 1505 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.001G473100 [exp] 53 / 4e-07 AT5G56290 978 / 0.0 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030525 [exp] 933 / 0 AT1G78770 847 / 0.0 anaphase promoting complex 6 (.1) Lus10012876 [exp] 883 / 0 AT1G78770 806 / 0.0 anaphase promoting complex 6 (.1) Lus10003113 [exp] 66 / 5e-11 AT3G04240 1687 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004779 [exp] 66 / 7e-11 AT3G04240 1683 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003576 [exp] 64 / 3e-10 AT3G04240 1606 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012968 [exp] 59 / 6e-09 AT2G20000 1126 / 0.0 HOBBIT, CDC27 family protein (.1) Lus10021336 [exp] 54 / 4e-07 AT3G11540 1509 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10017009 [exp] 53 / 7e-07 AT3G11540 1356 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10027124 [exp] 49 / 1e-05 AT5G56290 1003 / 0.0 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1) Lus10032883 [exp] 48 / 2e-05 AT5G56290 758 / 0.0 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00515 [poplar] [flax] TPR_1 Tetratricopeptide repeat CL0020 [poplar] [flax] TPR PF07719 [poplar] [flax] TPR_2 Tetratricopeptide repeat CL0020 [poplar] [flax] TPR PF12895 [poplar] [flax] ANAPC3 Anaphase-promoting complex, cyclosome, subunit 3 CL0020 [poplar] [flax] TPR PF13424 [poplar] [flax] TPR_12 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Potri.001G389300.1 pacid=42788846 polypeptide=Potri.001G389300.1.p locus=Potri.001G389300 ID=Potri.001G389300.1.v4.1 annot-version=v4.1 ATGAGAGAAGAGCAAATAGAGAAGCTGCGAGGGGTAGTGCGCGACTGCGTGAGCAAGCACTTGTACTCCTCCGCCATTTTCTTCGCCGACAAAGTCGCCG CTTTCACCAACGACCCCGCCGACATCTACATGCAAGCCCAGGCTCTCTTCCTCGGCCGCCACTACCGTCGTGCCTACCACCTCCTCAACGCCTCCAAAAT CGTCCTTCGCGACCTCCGCTTCCGCTACCTCGCCGCAAAATGCCTCGAGGAATTGAAAGAGTGGGACCAGTGTTTGTTAATGCTCGGTGATGCAAAGGTT GATGAGCATGGAGATGTATATGATACTAAAGATTGTAACGTTATGTACTTAGATAAGGATAGTGAAGATCGCGAGATCAATATTTCTGCAGCAACATGTT TTCTAAGAGGCAGGGCTTATGAAGCATTGGAAAATCGTGCCCTGGCTCGACAGTGGTACAAGGCTGCTATCAAGGCCGATCCTTTATGCTATGAGGCTTT GGAATGCCTTATTGAAAATCACATGCTCACATGTGAAGAAGAAACAAGGCTGCTTTCCTCCTTGCAATTCGGTCCAGAAGATGGGTGGCTCTCTTCATTC TACTCATGCTTGATAAAAAAGTATGAAAAAAAGAGTGTTGTAGAAGCCAAATTCAGAGAAGTTGAAAAAGAAAGCTGCAATAGCAATCCTTCTAGCCCAT CTATCAAGCATACACTAAAAAATGATACTGATCTTTTGACCTGCAAAGCAGAGTACTTCAATCAGTGTGGTGAATATCAGAAATGCTTTGAACTAACTTC AGACCTGCTTGAGAAAGACCCTTTTCATTTGAAATGTACCTTAGTACACATAGCTGCTGCTATGGAGCTTGGAAATTCAAATGAGCTTTATCTTATGGCA TCGAACTTAGTGAAGGATTATCCTCAAAAGGCTCTCTCATGGTTTGCTGTCGGCTGCTACTACTACTGTATCAAGAAGTATGATCAATCACGGCGTTATT TCAGCAAGGCTACAAGTCTAGAGGGAACCTTTGCACCTGCTTGGATTGGCTTTGGGAATGCTTATGCTGCTCAAGAAGAGGGTGATCAAGCAATGTCGGC ATACCGCACTGCTGCTCGTTTATTTCCAGGGTGCCATTTACCAACTTTGTATATTGGGATGGAGTACATGCGAACTCACAGCTATAAGCTTGCTGAGCAG TTTTTCATGCAGGCAAAGGCAATTTGCCCTTCAGATCCACTTGTATACAACGAACTTGGTGTTGTTGCTTATAACATGAAGGAGTACAATAAGTCTGTGT TGTGGTTTGAGAAGACTTTGAAGCACATTCCGTCTTTAAGTCAATTGTGGGAACCAACTATTGTTAATCTTGCCCATGCCTACAGAAAGTTGAAGATTTA CCATGAAGCAATTTCATATTATGAGAGAGCACTTACACTATCACCTAGAAGCTTGAGTACTTATGCTGGTCTTGCATACACTTATCATTTGCAGGATAAC TTTACTGCTGCAATCACATGCTACCACAAGGCTTTATGGCTGAAACCAGACGATCAATTTTGCACTGAAATGTTGAGCTTGGCACTTGTAGATGAAGGTC GTCGAGGCATAGACCCCAAAATTGAATTCCGCTGA
AA sequence Show only first row Show all	>Potri.001G389300.1 pacid=42788846 polypeptide=Potri.001G389300.1.p locus=Potri.001G389300 ID=Potri.001G389300.1.v4.1 annot-version=v4.1 MREEQIEKLRGVVRDCVSKHLYSSAIFFADKVAAFTNDPADIYMQAQALFLGRHYRRAYHLLNASKIVLRDLRFRYLAAKCLEELKEWDQCLLMLGDAKV DEHGDVYDTKDCNVMYLDKDSEDREINISAATCFLRGRAYEALENRALARQWYKAAIKADPLCYEALECLIENHMLTCEEETRLLSSLQFGPEDGWLSSF YSCLIKKYEKKSVVEAKFREVEKESCNSNPSSPSIKHTLKNDTDLLTCKAEYFNQCGEYQKCFELTSDLLEKDPFHLKCTLVHIAAAMELGNSNELYLMA SNLVKDYPQKALSWFAVGCYYYCIKKYDQSRRYFSKATSLEGTFAPAWIGFGNAYAAQEEGDQAMSAYRTAARLFPGCHLPTLYIGMEYMRTHSYKLAEQ FFMQAKAICPSDPLVYNELGVVAYNMKEYNKSVLWFEKTLKHIPSLSQLWEPTIVNLAHAYRKLKIYHEAISYYERALTLSPRSLSTYAGLAYTYHLQDN FTAAITCYHKALWLKPDDQFCTEMLSLALVDEGRRGIDPKIEFR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G78770		APC6	anaphase promoting complex 6 (...		Potri.001G389300 [exp]	0	1
AT1G04020		ROW1, ATBARD1, ...	breast cancer associated RING ...		Potri.002G259000 [exp]	4.00	0.7759
AT1G79510			Uncharacterized conserved prot...		Potri.008G083400 [exp]	11.18	0.7819
AT1G56310			Polynucleotidyl transferase, r...		Potri.005G020000 [exp]	13.19	0.7865
AT3G11230			Yippee family putative zinc-bi...		Potri.016G115000 [exp]	15.09	0.6758
AT5G28460			Pentatricopeptide repeat (PPR)...		Potri.014G090400 [exp]	16.70	0.7878
AT5G26860		LON1, LON_ARA_A...	lon protease 1 (.1)		Potri.005G017600 [exp]	17.29	0.7503	Pt-LON_ARA_ARA.2
AT1G15400			unknown protein		Potri.001G172100 [exp]	17.32	0.7592
AT2G18670			RING/U-box superfamily protein...		Potri.006G175700 [exp]	19.44	0.7076
					Potri.003G063150 [exp]	22.51	0.7842
AT3G03960			TCP-1/cpn60 chaperonin family ...		Potri.019G034200 [exp]	28.19	0.7085

Compare expression of checked genes

Potri.001G389300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.