Plant FIBer expression Database

Potri.001G389400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G78780 352 / 3e-124 pathogenesis-related family protein (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G389800
[exp]
469 / 4e-170 AT1G78780 361 / 9e-128 pathogenesis-related family protein (.1.2.3.4)
Potri.011G108900
[exp]
434 / 3e-156 AT1G78780 365 / 4e-129 pathogenesis-related family protein (.1.2.3.4)
Potri.005G188300
[exp]
259 / 2e-87 AT1G78780 251 / 2e-84 pathogenesis-related family protein (.1.2.3.4)
Potri.005G188400
[exp]
256 / 2e-86 AT1G78780 249 / 1e-83 pathogenesis-related family protein (.1.2.3.4)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037316
[exp]
339 / 2e-118 AT1G78780 337 / 9e-118 pathogenesis-related family protein (.1.2.3.4)
Lus10039018
[exp]
289 / 4e-99 AT1G78780 301 / 6e-104 pathogenesis-related family protein (.1.2.3.4)
Lus10018919
[exp]
245 / 1e-81 AT1G78780 239 / 1e-79 pathogenesis-related family protein (.1.2.3.4)
Lus10035732
[exp]
234 / 2e-78 AT1G78780 249 / 2e-85 pathogenesis-related family protein (.1.2.3.4)
Lus10029763
[exp]
235 / 5e-78 AT1G78780 228 / 3e-75 pathogenesis-related family protein (.1.2.3.4)
Lus10027315
[exp]
162 / 1e-50 AT1G78780 171 / 3e-55 pathogenesis-related family protein (.1.2.3.4)
Lus10042792
[exp]
106 / 6e-29 AT1G78780 115 / 1e-33 pathogenesis-related family protein (.1.2.3.4)
Lus10028620
[exp]
57 / 9e-11 AT1G78780 67 / 1e-15 pathogenesis-related family protein (.1.2.3.4)
PFAM info
Representative CDS sequence
>Potri.001G389400.1 pacid=42789396 polypeptide=Potri.001G389400.1.p locus=Potri.001G389400 ID=Potri.001G389400.1.v4.1 annot-version=v4.1
ATGGCTACTGAAGAAGCATGTACGATTATAAAAGTAGGAGATAAATACAGATCTTTCTTGCATGAAGACACTGAGAATACCACACAGTGGAGGCATGGTG
GCCCTCCCAATTTCGATACAGTAAATCAGCTCTTTGAAGAAGGCCGAACTAAGGAATGGCCAAAAGGATCGCTAGAAGAAGTAGTGCAAAATGCTATAAA
GACATGGGATATGGAAATCGAACACAAGACTCGCGTACAGGACATTAAGACCATCAACCCTGACACGTTCAAGCTCATTGTTAATGGAAGAGAGGGATTA
GCAGCAGAAGAGACGCTTAGGATTGGTAGCTACAATGCTTTGTTGAAGAGTTCTCTGCCGAAGGAATTTCAGTACTACAAAGCAGATGAAGAAACCTTCG
AATCATCTCATGATGCCTTTCGATCTGCCTTGCCTCGAGGATTCGCATGGGAAGTGCTGAGTGTATATTCAGGGCCTCCAGTGATTTCTTTCAAATTCAG
GCATTGGGGTTTCTTTGAAGGACCTTTCAAAGGCCATGCTCCTACTGAAGAAAAGGTTGAGTTCTATGGCTTTGGAATCCTCAAGGTGGATGAATCTTTG
AGGGCAGAAGATGTGGAGGTTTACTATGACCCAGCAGAGTTATTTGGGGGGCTCCTGAAAGGGGCGCTGATATCGCCATGCCAATCAGAAGATAACACTG
TCAACACCGCCACAGCAACGCGTGGCTGTCCATTTTCCAAATAA
AA sequence
>Potri.001G389400.1 pacid=42789396 polypeptide=Potri.001G389400.1.p locus=Potri.001G389400 ID=Potri.001G389400.1.v4.1 annot-version=v4.1
MATEEACTIIKVGDKYRSFLHEDTENTTQWRHGGPPNFDTVNQLFEEGRTKEWPKGSLEEVVQNAIKTWDMEIEHKTRVQDIKTINPDTFKLIVNGREGL
AAEETLRIGSYNALLKSSLPKEFQYYKADEETFESSHDAFRSALPRGFAWEVLSVYSGPPVISFKFRHWGFFEGPFKGHAPTEEKVEFYGFGILKVDESL
RAEDVEVYYDPAELFGGLLKGALISPCQSEDNTVNTATATRGCPFSK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G78780 pathogenesis-related family pr... Potri.001G389400
[exp]
0 1
AT1G05260 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Pe... Potri.007G122100
[exp]
2.23 0.9550 SEPA1.1
AT5G12380 ANNAT8 annexin 8 (.1) Potri.003G200700
[exp]
2.82 0.9506 ANN1.1
AT1G28130 GH3.17 Auxin-responsive GH3 family pr... Potri.001G069000
[exp]
3.46 0.9440 7
AT1G08090 LIN1, ACH1, NRT... LATERAL ROOT INITIATION 1, nit... Potri.009G008500
[exp]
7.34 0.9314 PtNtr2-4,Pt-NRT2.7
AT4G35160 O-methyltransferase family pro... Potri.004G050500
[exp]
9.53 0.9342 FOMT1,OOMT2.17
AT5G39110 RmlC-like cupins superfamily p... Potri.013G052300
[exp]
9.79 0.9390
Potri.006G213801
[exp]
10.72 0.9193
AT1G78770 APC6 anaphase promoting complex 6 (... Potri.001G389500
[exp]
12.96 0.8963
AT4G25650 TIC55-IV, PTC52... TRANSLOCON AT THE INNER ENVELO... Potri.003G219550
[exp]
13.74 0.9160
Potri.001G388600
[exp]
13.78 0.9207 PPO5

Potri.001G389400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.