Plant FIBer expression Database

Potri.001G389800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G78780 362 / 6e-128 pathogenesis-related family protein (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G389400
[exp]
469 / 4e-170 AT1G78780 352 / 4e-124 pathogenesis-related family protein (.1.2.3.4)
Potri.011G108900
[exp]
461 / 3e-167 AT1G78780 365 / 4e-129 pathogenesis-related family protein (.1.2.3.4)
Potri.005G188300
[exp]
262 / 1e-88 AT1G78780 251 / 2e-84 pathogenesis-related family protein (.1.2.3.4)
Potri.005G188400
[exp]
259 / 3e-87 AT1G78780 249 / 1e-83 pathogenesis-related family protein (.1.2.3.4)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037316
[exp]
357 / 2e-125 AT1G78780 337 / 9e-118 pathogenesis-related family protein (.1.2.3.4)
Lus10039018
[exp]
297 / 3e-102 AT1G78780 301 / 6e-104 pathogenesis-related family protein (.1.2.3.4)
Lus10029763
[exp]
241 / 2e-80 AT1G78780 228 / 3e-75 pathogenesis-related family protein (.1.2.3.4)
Lus10018919
[exp]
240 / 5e-80 AT1G78780 239 / 1e-79 pathogenesis-related family protein (.1.2.3.4)
Lus10035732
[exp]
238 / 9e-80 AT1G78780 249 / 2e-85 pathogenesis-related family protein (.1.2.3.4)
Lus10027315
[exp]
163 / 8e-51 AT1G78780 171 / 3e-55 pathogenesis-related family protein (.1.2.3.4)
Lus10042792
[exp]
107 / 3e-29 AT1G78780 115 / 1e-33 pathogenesis-related family protein (.1.2.3.4)
Lus10028620
[exp]
56 / 2e-10 AT1G78780 67 / 1e-15 pathogenesis-related family protein (.1.2.3.4)
PFAM info
Representative CDS sequence
>Potri.001G389800.1 pacid=42793247 polypeptide=Potri.001G389800.1.p locus=Potri.001G389800 ID=Potri.001G389800.1.v4.1 annot-version=v4.1
ATGGCAGAAGAAGCTTTGATTAAAAAAGCGGGAGATAAGTACAGATCTTTCTTACATGATGAAGCTGAGAATACCACGCAGTGGAGGCATGGTGGCCCTC
CCATATATGATTCCGTAAATCAGCTCTTCGAAGAAGGCCGAACTAAGGAATGGCCAAAAGGATCTCTAGAAGAAGTGGTGCAAAATGCTGTAAAGTCTTG
GGAAATGGAACTCTCACACAAGACTCGTTTACAGGACTTCAAGACCATCAACCCTGACAAATTCAAGCTCATTGTTAATGGAAGAGAGGGTTTATCGGGA
GAAGAGACGCTTAGGATTGGTAGCTACAATGCTTTGTTGAAGAGTTCTCTGCCGAAGGAATTTCAGTACTACAAAGCAGATGAAGAAACCTTCGAATCAT
CTCATGATGCCTTTCGATCTGCCTTGCCTCGAGGATTCGCATGGGAAGTGCTGAGTGTATATTCAGGGCCTCCAGTGATTTCTTTCAAATTCAGGCATTG
GGGTTTCTTTGAAGGACCTTTCAAAGGCCATGCTCCTACTGAAGAAAAGGTTGAGTTCTATGGCTTTGGAGTCCTCAAGGTGGATGAATCTTTGAGGGCA
GAAGATGTGGAGGTTTATTATGACCCAGCAGAGTTATTTGGGGGGCTCCTGAAAGGGGCGCTGATATCGCCATGCCAATCAGAAGATAACACTGTCAACA
CCGCCACAGCAACGCGTGGCTGTCCATTTTCCAAATAA
AA sequence
>Potri.001G389800.1 pacid=42793247 polypeptide=Potri.001G389800.1.p locus=Potri.001G389800 ID=Potri.001G389800.1.v4.1 annot-version=v4.1
MAEEALIKKAGDKYRSFLHDEAENTTQWRHGGPPIYDSVNQLFEEGRTKEWPKGSLEEVVQNAVKSWEMELSHKTRLQDFKTINPDKFKLIVNGREGLSG
EETLRIGSYNALLKSSLPKEFQYYKADEETFESSHDAFRSALPRGFAWEVLSVYSGPPVISFKFRHWGFFEGPFKGHAPTEEKVEFYGFGVLKVDESLRA
EDVEVYYDPAELFGGLLKGALISPCQSEDNTVNTATATRGCPFSK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G78780 pathogenesis-related family pr... Potri.001G389800
[exp]
0 1
AT1G22360 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 ... Potri.001G312600
[exp]
2.00 0.9649
AT1G53708 RTFL9 ROTUNDIFOLIA like 9 (.1) Potri.003G073900
[exp]
4.89 0.9395
AT1G11925 Stigma-specific Stig1 family p... Potri.008G220900
[exp]
8.06 0.9344
AT3G45140 ATLOX2, LOX2 ARABIODOPSIS THALIANA LIPOXYGE... Potri.009G022400
[exp]
9.79 0.9344
AT3G48270 CYP71A26 "cytochrome P450, family 71, s... Potri.015G085600
[exp]
15.42 0.9322
AT1G14040 EXS (ERD1/XPR1/SYG1) family pr... Potri.010G164900
[exp]
17.32 0.9190
AT5G06200 CASP4 Casparian strip membrane domai... Potri.016G075400
[exp]
18.11 0.9268
AT5G13900 Bifunctional inhibitor/lipid-t... Potri.013G131500
[exp]
20.44 0.9193
AT3G07990 SCPL27 serine carboxypeptidase-like 2... Potri.010G220200
[exp]
21.63 0.9176
AT4G25650 TIC55-IV, PTC52... TRANSLOCON AT THE INNER ENVELO... Potri.003G219550
[exp]
22.62 0.9015

Potri.001G389800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.