Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14880 256 / 2e-86 unknown protein AT4G18650 96 / 4e-24 transcription factor-related (.1) AT1G58330 83 / 3e-19 ZW2 transcription factor-related (.1) AT4G18680 82 / 1e-18 unknown protein AT4G18690 81 / 6e-18 unknown protein AT5G65210 79 / 5e-17 bZIP TGA1 bZIP transcription factor family protein (.1.2.3.4.5.6) AT5G45830 78 / 6e-17 ATDOG1, GSQ5, DOG1 GLUCOSE SENSING QTL 5, delay of germination 1 (.1) AT5G06960 76 / 4e-16 bZIP TGA5, OBF5 TGACG MOTIF-BINDING FACTOR 5, OCS-element binding factor 5 (.1.2) AT5G06950 76 / 5e-16 bZIP TGA2, AHBP-1B bZIP transcription factor family protein (.1.2.3.4) AT1G08320 76 / 6e-16 bZIP TGA9, bZIP21 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G098800 [exp] 160 / 2e-48 AT3G14880 159 / 6e-48 unknown protein Potri.004G058200 [exp] 91 / 6e-22 AT4G18650 226 / 1e-74 transcription factor-related (.1) Potri.007G079900 [exp] 83 / 4e-19 AT5G10030 339 / 5e-117 OCS ELEMENT BINDING FACTOR 4, TGACG motif-binding factor 4 (.1.2) Potri.005G082000 [exp] 81 / 1e-17 AT5G65210 506 / 0.0 bZIP transcription factor family protein (.1.2.3.4.5.6) Potri.007G085700 [exp] 78 / 1e-16 AT5G65210 523 / 0.0 bZIP transcription factor family protein (.1.2.3.4.5.6) Potri.009G164300 [exp] 77 / 4e-16 AT1G08320 574 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Potri.016G036500 [exp] 76 / 9e-16 AT5G06950 410 / 2e-142 bZIP transcription factor family protein (.1.2.3.4) Potri.005G170500 [exp] 74 / 2e-15 AT1G77920 468 / 5e-166 bZIP transcription factor family protein (.1) Potri.006G058800 [exp] 74 / 5e-15 AT5G06839 540 / 0.0 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013711 [exp] 323 / 5e-113 AT3G14880 251 / 2e-84 unknown protein Lus10005579 [exp] 160 / 4e-49 AT3G14880 121 / 1e-33 unknown protein Lus10013746 [exp] 153 / 7e-46 AT3G14880 141 / 5e-41 unknown protein Lus10042453 [exp] 140 / 2e-40 AT3G14880 145 / 3e-42 unknown protein Lus10039193 [exp] 139 / 2e-40 AT3G14880 135 / 5e-39 unknown protein Lus10039196 [exp] 137 / 2e-39 AT3G14880 135 / 1e-38 unknown protein Lus10015276 [exp] 102 / 5e-26 AT4G18690 204 / 6e-65 unknown protein Lus10028231 [exp] 97 / 3e-24 AT1G58330 154 / 8e-47 transcription factor-related (.1) Lus10007282 [exp] 89 / 2e-21 AT4G18650 208 / 2e-67 transcription factor-related (.1) Lus10019543 [exp] 82 / 6e-18 AT1G08320 508 / 5e-178 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14144 [poplar] [flax] DOG1 Seed dormancy control
Representative CDS sequence Show only first row Show all	>Potri.001G390100.1 pacid=42789337 polypeptide=Potri.001G390100.1.p locus=Potri.001G390100 ID=Potri.001G390100.1.v4.1 annot-version=v4.1 ATGAGCAGCACCAGCAGCTTTACCAGGTTCTATGATACCTGGTTCGACCAACTCAATCAACTTCTGGAACAATTGAGGACAGCCCCCAAACCACCAAGCA GCCAAGATGATAGAAGCCATCTTAGTAGCCTAGCCCAAAAGATCGTAAGCCACTATGCCGAGTTCTATAGGGTGAAATCTATGGCCATAGAGAGTGACGT TTTGTCAGTCTTCACAGCCCCTTGGGCCTCCTGCTTCGAGAGGTCGCTTCACTGGATTGCTGGGTGGCGACCCACCACCTTGTTTCACCTTGTCTACACT GAGTCTAGTATTCTTTTTGAGTTTCATATTGCTGATATTTTAAAGGGCCGAAGTACTGGAGATCTTGGTGATCTATCACCTAATCAATTCAGGAGAGTCA GTGAGTTACAATGTGAGACAGTGAAAGAAGAGAATGCGATAACAGGTGAGCTATCAGAGTGGCAAGATAGTGCAAATGAGGTAATGTTGGGGTCATTCAC AGATCTTGGTGACAAGGTCGGACGGCTGGTGAGTGTTGTGAAGAAGGCAGATGACCTAAGGCTGAGAACAATCAAGAGGGTTGTTGAATTATTGACCACA CAGCAAGCAGTGGAATTCTTGGTTGCTGCTGGTGAATTGCAGTTTGGAGTCTACGGGTGGGGGAGGAAGCTTGATCACCGCCCATGTCAAAGTGTTTGA
AA sequence Show only first row Show all	>Potri.001G390100.1 pacid=42789337 polypeptide=Potri.001G390100.1.p locus=Potri.001G390100 ID=Potri.001G390100.1.v4.1 annot-version=v4.1 MSSTSSFTRFYDTWFDQLNQLLEQLRTAPKPPSSQDDRSHLSSLAQKIVSHYAEFYRVKSMAIESDVLSVFTAPWASCFERSLHWIAGWRPTTLFHLVYT ESSILFEFHIADILKGRSTGDLGDLSPNQFRRVSELQCETVKEENAITGELSEWQDSANEVMLGSFTDLGDKVGRLVSVVKKADDLRLRTIKRVVELLTT QQAVEFLVAAGELQFGVYGWGRKLDHRPCQSV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14880			unknown protein		Potri.001G390100 [exp]	0	1
AT5G27660			Trypsin family protein with PD...		Potri.018G001301 [exp]	14.86	0.8879
AT3G52610			unknown protein		Potri.016G078000 [exp]	22.09	0.8808
AT3G60510			ATP-dependent caseinolytic (Cl...		Potri.001G156900 [exp]	26.94	0.8783
AT5G48670	MADS	FEM111, AGL80	AGAMOUS-like 80 (.1)		Potri.016G068132 [exp]	31.55	0.8689
AT3G55090		ABCG16	ATP-binding cassette G16, ABC-...		Potri.008G047900 [exp]	31.81	0.8775
AT3G11480		BSMT1, ATBSMT1	S-adenosyl-L-methionine-depend...		Potri.019G022400 [exp]	36.12	0.8715
AT4G29790			unknown protein		Potri.003G172701 [exp]	38.15	0.8678
AT5G45950			GDSL-like Lipase/Acylhydrolase...		Potri.004G051900 [exp]	42.82	0.8684
AT5G11320		YUC4	YUCCA4, Flavin-binding monooxy...		Potri.018G033200 [exp]	48.18	0.8676
AT3G09870			SAUR-like auxin-responsive pro...		Potri.006G125100 [exp]	51.28	0.8647

Compare expression of checked genes

Potri.001G390100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.