Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14890 407 / 5e-138 phosphoesterase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037922 [exp] 470 / 1e-166 AT3G14890 413 / 3e-139 phosphoesterase (.1.2) Lus10038650 [exp] 448 / 2e-157 AT3G14890 406 / 5e-136 phosphoesterase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [poplar] [flax] Zn_Beta_Ribbon PF00645 [poplar] [flax] zf-PARP Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region CL0137 [poplar] [flax] HAD PF08645 [poplar] [flax] PNK3P Polynucleotide kinase 3 phosphatase
Representative CDS sequence Show only first row Show all	>Potri.001G390500.4 pacid=42789204 polypeptide=Potri.001G390500.4.p locus=Potri.001G390500 ID=Potri.001G390500.4.v4.1 annot-version=v4.1 ATGCCTCCTACTTCAAAAGCCAGAATCATCGCCGAGTACGCGAAATCGAGCAGGTCATCGTGCAAGACATGCTCGAAAGCAATATCTGCTAAGGCCCTCA GGTTGGGTTTGGTCAGTAGAGACTCAAGAGGGTTTGATATGACCAAATGGCATCACTTGGGTTGCTTCTCTGACAAGATTGACTCTACCGAGCACATTGG AGGGTTTGATTCTCTCCAGAGTTGTGATCAGGAAGCCCTGAAGAAATTGGCGGAACAGGTTTCAAATGGAGATCAAGATGTTGAAATAAGCCGGAAAAGT TCCAAGAGAACAGATGAAGATGCGGAAGAAAGTGAACTGGAGAAAATAAATACGAAGAAAACTAAGTTGTCAATAGCTAATGAGGAAGCCAGCCTGGACA TAGCCTTTTCACTCTCCGATGTTAGGGACAATTATAAGGACGCTACATTATTACCTAAATGGAAGGCATTTCAGACAATTATATTTCTTGAACGGGATGA TGGTCTCCGTGATTCGAATAAAATTGCTGCATTTGATTTTGATGGCTGTCTCGCAAAAACATCTGTCAAGAGAGTAGGTGCAGATGCTTGGTCCATCATG TTCCCCTCAATACCAGACAAGCTGCTGAGCTTATATAATGATGGCTTCAAGCTGGTTATATTCACAAATGAATCCAATATTGATCGCTGGAAGAACAAAA GGCAGGTAGCTGTGGACTCAAAAATTGGACGCCTAAACAACTTCATCAAGCATGTCAAGGTTCCAATCCAGGTTTTTATAGCTTGTGGGTTTGATGGTAA AGTAGAAGATCCCTTCCGCAAACCTAAACCTGGAATGTGGCAGATTATGGAGAAACACTTTAACTCTGGCATCTCCATTGATATGGATCAATCCTTTTAT GTTGGTGATGCAGCAGGGAGACCCAATGATCATAGCGATGCTGACATAAAATTTGCAAAGGTTATTGGATTGAAATTCCTTGTCCCAGAGGACTACTTTG GTGTCTAA
AA sequence Show only first row Show all	>Potri.001G390500.4 pacid=42789204 polypeptide=Potri.001G390500.4.p locus=Potri.001G390500 ID=Potri.001G390500.4.v4.1 annot-version=v4.1 MPPTSKARIIAEYAKSSRSSCKTCSKAISAKALRLGLVSRDSRGFDMTKWHHLGCFSDKIDSTEHIGGFDSLQSCDQEALKKLAEQVSNGDQDVEISRKS SKRTDEDAEESELEKINTKKTKLSIANEEASLDIAFSLSDVRDNYKDATLLPKWKAFQTIIFLERDDGLRDSNKIAAFDFDGCLAKTSVKRVGADAWSIM FPSIPDKLLSLYNDGFKLVIFTNESNIDRWKNKRQVAVDSKIGRLNNFIKHVKVPIQVFIACGFDGKVEDPFRKPKPGMWQIMEKHFNSGISIDMDQSFY VGDAAGRPNDHSDADIKFAKVIGLKFLVPEDYFGV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14890			phosphoesterase (.1.2)		Potri.001G390500 [exp]	0	1
AT1G61000			unknown protein		Potri.017G043000 [exp]	11.22	0.5751
AT5G09270			unknown protein		Potri.005G066900 [exp]	11.35	0.6413
AT1G49170			Protein of unknown function (D...		Potri.005G056500 [exp]	15.65	0.6080
AT1G65980		TPX1	thioredoxin-dependent peroxida...		Potri.001G423500 [exp]	16.37	0.6237
AT1G61700			RNA polymerases N / 8 kDa subu...		Potri.003G102900 [exp]	26.07	0.5701
AT5G43080		CYCA3;1	Cyclin A3;1 (.1)		Potri.009G093100 [exp]	32.17	0.5729
AT1G72930		TIR	toll/interleukin-1 receptor-li...		Potri.005G004000 [exp]	34.98	0.6034
AT5G60340			P-loop containing nucleoside t...		Potri.006G228500 [exp]	36.76	0.5960
AT5G16550			unknown protein		Potri.004G082300 [exp]	38.65	0.5957
AT2G17270		PHT3;3	phosphate transporter 3;3 (.1)		Potri.005G098800 [exp]	38.98	0.5482

Compare expression of checked genes

Potri.001G390500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.