Plant FIBer expression Database

Potri.001G390600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G14900 491 / 7e-168 EMB3120 EMBRYO DEFECTIVE 3120, unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000244
[exp]
531 / 0 AT3G14900 627 / 0.0 EMBRYO DEFECTIVE 3120, unknown protein
Lus10039570
[exp]
438 / 1e-147 AT3G14900 530 / 0.0 EMBRYO DEFECTIVE 3120, unknown protein
PFAM info
Representative CDS sequence
>Potri.001G390600.1 pacid=42791021 polypeptide=Potri.001G390600.1.p locus=Potri.001G390600 ID=Potri.001G390600.1.v4.1 annot-version=v4.1
ATGTTGCTACATCAGGACCTTTCCTTCTCTAAAACCCTAAACCCTAATTTCTCACCTTTTCCTCCCCGCCCCAAAACCCTAAGCCTAACCCTTAAACCCC
AATTCCTCTGCACCACACTCTCATTTCCCAGCCAAACCCCCCAATTATGGCGCCAAGATGCCTCTCTCTGCCGAGACACCCGCTCCTTCGCCGGCCGGAG
CAAGAAGGAACCAGGCGCTCCATCTCCTGGTCGAACCGGAGGTTACCGCAGACCGAAGCGGAAGGCACGCATTAGAAGGGTAAATATAGAGGAATCCCCT
TACTTCCGGCTGAAAAACTCCAACAAAAACCACCCAGATAACTTGACAGAGGACCAATTGAACCAAATTGGTCTCGGGTACGATTACATGGCTCGGTTCA
TGGACAAAGATGACCCAAATTTAAAACACCCGTATGATTGGTACCGATATGGAGAGTACGGGCCTTATTCATGGCGAGGTGTGGTTGTTGGTGAACCAGT
GCTAGGAGGGATTACTGATGAGTGTGTGACATTATATAGTCAAGTGAAAGATGATGCAGAGTGGGATAAAATTGAGCAACATGAAATGGCTGTTGATTTT
GGAGAGAGGTTGAAACAAATGAATAAAGAAGCTGGGTTTCGTCATTTTTGGGTTTTTGTTAGACATCCGAAATGGAGGTTAAATGAAATGCCATGGGAGC
AGTGGACACTGGTGAGTGAAGTTGTGGTGGAAGCCGGGAAACAGCGGTTGGATAAGTGGAATTTGATGGGGAGGTTAGGGAATCAAGCAAGGAAGTTGAT
AACACGGTGTGCTGCTTGGTTTAGGCCGGATATTATATATGTTAAGAGGCCAGTTTTTCAGTGTAGGTTTGAGCCTCAAGATGATTTTTTTAGGGGCTTA
ATGCCGTTTTTGGATCCGAAAACAGAAAAGGATTTTTTGTTTGAGTTGGAGAATGAGGATGGGAGCGTGCAGTTGTGTACGTATTATGAAGGGTTGTGTA
AGATTGTGAAGGTGAGTCAGAAGGCGTTTGTGGATGATGTGGTGAATGCGTATGAGAAGATGAGTGATGAGAGGAAATCAGAGTGTTTGGGGTTCTTGAT
GAGGAATCATCCGGTGCAGTTGTTGCATCCGTATACGAAGGAGTGGAAGGCTAAGTTGGAGGAAATTGAGTTGGGTTGTGATGCACCAGATGACGATGAG
GAGTATGGTAAGAATGAAACTGAGTACACTGAGTGGATTGAGGATGATGGTGATGGTGATGGTGATGATCAAGATGACGTGGTTCTGGACATGGAAGGAG
GTGGAGTTGATCAGGATGATGATGATGAATCAATAAGTGAAGAAGAAGATGATGATGAAGAAGAAGAAGAAGAGAACGAGCAGTATTGGGAGAAGAAGTT
TAAGAAGGCATTGAGTAGTTCTGAAGAGATGGAGAATCTTGTGAAATGGAGTGTAGATAGAACTGATGAGATATATAAGAAGCAGTCTAAGGCCATGATG
CAAGGGGAAGAAGGGAAGGGGAAGAGTGAAGCGGATGGAGATGAAACTGCATTGAGAGGTGTTCGAGCTAAAGTCAGTCCAAAAGAATGGAAGATTGTGG
GGATTGGTAGATGGGGAAGGAGGATCAAGAAGGCTAAAATACCTCCGGGTTTGTTTCTGAGAGCAGCAGTGAGACCTTTTAGATATAGGAATCTAGTCAA
GGAGATTGTTTTGACAAGGCATGCAATCTTGGACGGTGATATCGGTGGGAAGGATTGA
AA sequence
>Potri.001G390600.1 pacid=42791021 polypeptide=Potri.001G390600.1.p locus=Potri.001G390600 ID=Potri.001G390600.1.v4.1 annot-version=v4.1
MLLHQDLSFSKTLNPNFSPFPPRPKTLSLTLKPQFLCTTLSFPSQTPQLWRQDASLCRDTRSFAGRSKKEPGAPSPGRTGGYRRPKRKARIRRVNIEESP
YFRLKNSNKNHPDNLTEDQLNQIGLGYDYMARFMDKDDPNLKHPYDWYRYGEYGPYSWRGVVVGEPVLGGITDECVTLYSQVKDDAEWDKIEQHEMAVDF
GERLKQMNKEAGFRHFWVFVRHPKWRLNEMPWEQWTLVSEVVVEAGKQRLDKWNLMGRLGNQARKLITRCAAWFRPDIIYVKRPVFQCRFEPQDDFFRGL
MPFLDPKTEKDFLFELENEDGSVQLCTYYEGLCKIVKVSQKAFVDDVVNAYEKMSDERKSECLGFLMRNHPVQLLHPYTKEWKAKLEEIELGCDAPDDDE
EYGKNETEYTEWIEDDGDGDGDDQDDVVLDMEGGGVDQDDDDESISEEEDDDEEEEEENEQYWEKKFKKALSSSEEMENLVKWSVDRTDEIYKKQSKAMM
QGEEGKGKSEADGDETALRGVRAKVSPKEWKIVGIGRWGRRIKKAKIPPGLFLRAAVRPFRYRNLVKEIVLTRHAILDGDIGGKD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G14900 EMB3120 EMBRYO DEFECTIVE 3120, unknown... Potri.001G390600
[exp]
0 1
AT3G48500 PDE312, PTAC10 PLASTID TRANSCRIPTIONALLY ACTI... Potri.015G091700
[exp]
2.82 0.9633
AT1G15510 VAC1, ATECB2 VANILLA CREAM 1, ARABIDOPSIS E... Potri.003G058700
[exp]
5.47 0.9498
AT1G63680 APG13, ATMURE, ... PIGMENT DEFECTIVE EMBRYO 316, ... Potri.001G103300
[exp]
7.07 0.9531 Pt-PDE316.1
AT4G33510 DHS2 3-deoxy-d-arabino-heptulosonat... Potri.001G150500
[exp]
9.11 0.8938
AT1G59720 CRR28 CHLORORESPIRATORY REDUCTION28,... Potri.018G092400
[exp]
9.16 0.9455
AT1G59990 RH22, EMB3108 RNA helicase 22, EMBRYO DEFECT... Potri.008G193800
[exp]
10.24 0.9455
AT5G39980 Tetratricopeptide repeat (TPR)... Potri.017G075700
[exp]
10.39 0.9478
AT4G37670 NAGS2 N-acetyl-l-glutamate synthase ... Potri.007G005300
[exp]
11.13 0.9000
AT5G66520 Tetratricopeptide repeat (TPR)... Potri.004G237000
[exp]
11.22 0.9447
AT2G40720 Tetratricopeptide repeat (TPR)... Potri.001G258500
[exp]
12.00 0.9373

Potri.001G390600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.