Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14910 674 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011169 [exp] 709 / 0 AT3G14910 681 / 0.0 unknown protein Lus10043078 [exp] 692 / 0 AT3G14910 662 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14655 [poplar] [flax] RAB3GAP2_N Rab3 GTPase-activating protein regulatory subunit N-terminus
Representative CDS sequence Show only first row Show all	>Potri.001G390700.3 pacid=42787752 polypeptide=Potri.001G390700.3.p locus=Potri.001G390700 ID=Potri.001G390700.3.v4.1 annot-version=v4.1 ATGACGTCCAAGCGAAGTCACACGACGGAGCTCGGCTGCATAGCCGGCGAGGAGCTATCCGACCTCGGTGCAGGCAAGGAAGGATGGCTCGTTGAAAACC CGAACCTTCTATGCGCTCTAGACACTCACTCTCTCGCTCTTGCAAATCGGTCTTTAATTTTAATCACCGGGTGGGACGATGGGCCCCGTAGCAAGATCCG ACCCGAGCTGTCCCCAATCGAATCGGAAATCATTTCCGCTCTAGAATGGCTAGTGTTTGACGAGATTAAAGTGATCGCAGTTGGCACTTCACGTGGGTAT TTCATGGTTTATTCATTGGATGGTCTTTTAATTCATAGACAGTTGGTGTATCCTGGGCGTATATTGAAATTAAGAGTCCGTGGAACTAAGAAAGATATGA TGAGTAGTCATGAGGGGTCCAGTGAGGAGGTTTCGGTTGTTATTCCTGGCGTCATTGCGCGTTTCGATGGCGCTGATATTCGGAATATATTGCAAGAGTG GTTTCAAGAAACGAATTCGCATTTCTGGGATGAAAAGTCGAAAAGGAGAGATTACGAGGAGCTAGGAAATGGTTTTAAGAGATTGCCTCATCAGTTGTGG AGTGTTGATAAATTTGGGTTGTGTGCTGATGCAGCTATCACTGGAATAATGCCTCCTCCGCTAATGGAAATTCAGTCAAGTCAACGTTACTATCGTGCAG TCACAATTGGAGAGGATGCTGTGATTTCAGCTTATAGGCTTTCAGAAGACAGAAGCAGGTCTTTGGTGGGAGCTATTTTGTCAAAAGTTATGCCCGCAGC ATTCTCAACTATATCTTCTGTTTCTAAAATGATATGGCGAAGTGAACGAACGCCAACCAAAAAGCCGGAAGTAAAGCCTCAATCATTTGCTAAAGCTTCT CCCTTAACATGTCTGAAGGATCACCCAAGGAAAGGTGAGAAGCTCACATTATCACCTAGTGGAACATTGGCTGCGATTACAGATTCACTTGGTCGTATAT TGTTATTGGACACTCAGGCACTGGTGGTTGTGCGACTATGGAAGGGATATCGTGATGCTAACTGTCTGTTTATGGAGATGCTAGTTAGCATGAACAGTGC GGGGGCAAGTTCCTCTCACCATGAACCATCAAAGAGTGATTATTGCCTCTGTCTAGCAATTCATGCACCTCGGAAAGGGATCATTGAGGTCTGGCAGATG AGAACTGGACCACGTCTGCTAACAATTCAATGTGCCAAGGGTAGTAAATTACTGCAACCAACATACAGGTTTGGATCATCATTGGACTCTCCATATGTTC CTCTAGAAGTGTTCTTATTGAACGGAGACTCAGGTCAATTGTCAGTTTTAAACCGTTCTCTTAACTGA
AA sequence Show only first row Show all	>Potri.001G390700.3 pacid=42787752 polypeptide=Potri.001G390700.3.p locus=Potri.001G390700 ID=Potri.001G390700.3.v4.1 annot-version=v4.1 MTSKRSHTTELGCIAGEELSDLGAGKEGWLVENPNLLCALDTHSLALANRSLILITGWDDGPRSKIRPELSPIESEIISALEWLVFDEIKVIAVGTSRGY FMVYSLDGLLIHRQLVYPGRILKLRVRGTKKDMMSSHEGSSEEVSVVIPGVIARFDGADIRNILQEWFQETNSHFWDEKSKRRDYEELGNGFKRLPHQLW SVDKFGLCADAAITGIMPPPLMEIQSSQRYYRAVTIGEDAVISAYRLSEDRSRSLVGAILSKVMPAAFSTISSVSKMIWRSERTPTKKPEVKPQSFAKAS PLTCLKDHPRKGEKLTLSPSGTLAAITDSLGRILLLDTQALVVVRLWKGYRDANCLFMEMLVSMNSAGASSSHHEPSKSDYCLCLAIHAPRKGIIEVWQM RTGPRLLTIQCAKGSKLLQPTYRFGSSLDSPYVPLEVFLLNGDSGQLSVLNRSLN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14910			unknown protein		Potri.001G390700 [exp]	0	1
AT5G58575			unknown protein		Potri.001G279700 [exp]	16.73	0.7068
AT1G06110		SKIP16	SKP1/ASK-interacting protein 1...		Potri.007G130900 [exp]	33.58	0.6580
AT4G10100		CNX7, SIR5	"co-factor for nitrate, reduct...		Potri.019G070801 [exp]	58.88	0.6570
AT5G63000			Mitochondrial import inner mem...		Potri.015G078600 [exp]	73.51	0.6351
AT3G22480		PDF2	prefoldin 2 (.1.2)		Potri.001G240200 [exp]	90.88	0.6937
AT1G72770		HAB1	HYPERSENSITIVE TO ABA1, homolo...		Potri.003G044200 [exp]	121.03	0.6259
AT5G18420			unknown protein		Potri.017G122600 [exp]	121.49	0.6409
AT3G51610		NPU	NO PRIMEXINE AND PLASMA MEMBRA...		Potri.016G134700 [exp]	137.95	0.6644
AT2G35760			Uncharacterised protein family...		Potri.006G016900 [exp]	187.67	0.6384
AT5G18250			unknown protein		Potri.001G023000 [exp]	190.80	0.6317

Compare expression of checked genes

Potri.001G390700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.