Plant FIBer expression Database

Potri.001G390800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G14930 627 / 0 HEME1 Uroporphyrinogen decarboxylase (.1.2.3)
AT2G40490 396 / 1e-136 HEME2 Uroporphyrinogen decarboxylase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G109800
[exp]
471 / 8e-168 AT3G14930 386 / 2e-134 Uroporphyrinogen decarboxylase (.1.2.3)
Potri.019G048900
[exp]
402 / 5e-139 AT2G40490 633 / 0.0 Uroporphyrinogen decarboxylase (.1)
Potri.013G083200
[exp]
224 / 6e-72 AT2G40490 319 / 3e-109 Uroporphyrinogen decarboxylase (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011170
[exp]
642 / 0 AT3G14930 608 / 0.0 Uroporphyrinogen decarboxylase (.1.2.3)
Lus10043079
[exp]
641 / 0 AT3G14930 608 / 0.0 Uroporphyrinogen decarboxylase (.1.2.3)
Lus10012892
[exp]
394 / 2e-135 AT2G40490 621 / 0.0 Uroporphyrinogen decarboxylase (.1)
Lus10030544
[exp]
394 / 2e-135 AT2G40490 619 / 0.0 Uroporphyrinogen decarboxylase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0160 Methionine_synt PF01208 URO-D Uroporphyrinogen decarboxylase (URO-D)
Representative CDS sequence
>Potri.001G390800.1 pacid=42789496 polypeptide=Potri.001G390800.1.p locus=Potri.001G390800 ID=Potri.001G390800.1.v4.1 annot-version=v4.1
ATGAACTCTGCTTCTCTTACCAGTGCCTGCAGTTGCTTAACATGGAGGACCTCTTCAATCGTGCCTGTACAGCTAGGGTTTAATCACTCTACAAAATATA
AATCTTCTCCCCGAAGATTCCACATCGCCTGCTCATCCGCCTCCTCTTCTTCTGATCCATTGTTGGTAAAGGCTGCGAAAGGAGAACCAGTAAGTAGGCC
TCCGGCATGGATGATGCGTCAAGCAGGAAGGTATATGGCTGTTTACAGAAAGCTTGCAGAGAAATATCCATCCTTTAGAGAGAGGTCAGAGACGACAGAT
CTCATTGTGGAAATTTCTTTGCAGCCTTGGGAAGCTTTTCATCCTGATGGTGTTATTATTTTCTCCGACATACTTACACCTCTACCTGCATTTGGTGTGC
CGTTTGACATAGAAGAAGTGAGGGGCCCTGTTATTCAATCTCCAATTCGTTCTGAAGAAGGTTTGAAGGCTTTGCATCCGATTGAATTAGAGAAACTTCA
GTTTTTGGGAGACTCGCTTAGGATATTGCGCAATGAGGTTGAGGGGCGTGCTGCAGTTTTGGGTTTTGTAGGAGCACCTTGGACAATAGCTACCTATATA
GTGGAAGGGGGTACAACTCGTACATATACAAACATAAAGAGCATGTGCCATACAGCACCACAAGTGTTAAGGGCTCTCCTCTCACATCTGACAAAGGCGA
TATCTGACTACATTGTTTTTCAAGTTGAGTCTGGGGCTCATTGCATACAAATATTTGACTCGTGGGGTGGACAGCTACCTCCTGACATGTGGGATCGTTG
GTCAAAGCCATATATTGAAGAGATAGTCAGTACAGTCAGGAATAAATGCCCTGAAACGCCATTGGTTCTTTACATCAATGGAAATGGTGGCCTTCTAGAG
CGTATGAAGGGAACTGGAGTCGATGTGATTGGGCTGGACTGGACTGTGGATTTGGCAGATGGAAGGAAGCGTTTGGGGAGTGGGATCAGTGTACAAGGAA
ATGTGGACCCTGCTTACTTATTTTCACCACTTCCAGCATTGACTGATGAAATTCAAAGAGTTGTGAGATGTGCTGGGCCGAGGGGACATATTCTTAATCT
TGGGCATGGTGTTCTTGTTGGTACACCAGAAGAAGCTGTTGCACACTTTTTTGAAGTTGCTAGAAGCTTGGAGTTTACTACACCTCAAGGTCATGTGGTG
GAAGAACCAAAATTGGTAGTTTAA
AA sequence
>Potri.001G390800.1 pacid=42789496 polypeptide=Potri.001G390800.1.p locus=Potri.001G390800 ID=Potri.001G390800.1.v4.1 annot-version=v4.1
MNSASLTSACSCLTWRTSSIVPVQLGFNHSTKYKSSPRRFHIACSSASSSSDPLLVKAAKGEPVSRPPAWMMRQAGRYMAVYRKLAEKYPSFRERSETTD
LIVEISLQPWEAFHPDGVIIFSDILTPLPAFGVPFDIEEVRGPVIQSPIRSEEGLKALHPIELEKLQFLGDSLRILRNEVEGRAAVLGFVGAPWTIATYI
VEGGTTRTYTNIKSMCHTAPQVLRALLSHLTKAISDYIVFQVESGAHCIQIFDSWGGQLPPDMWDRWSKPYIEEIVSTVRNKCPETPLVLYINGNGGLLE
RMKGTGVDVIGLDWTVDLADGRKRLGSGISVQGNVDPAYLFSPLPALTDEIQRVVRCAGPRGHILNLGHGVLVGTPEEAVAHFFEVARSLEFTTPQGHVV
EEPKLVV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G14930 HEME1 Uroporphyrinogen decarboxylase... Potri.001G390800
[exp]
0 1
AT4G01310 Ribosomal L5P family protein (... Potri.002G154600
[exp]
2.00 0.9799
AT2G28190 CZSOD2, CSD2 copper/zinc superoxide dismuta... Potri.009G163200
[exp]
3.74 0.9793
AT4G02530 chloroplast thylakoid lumen pr... Potri.006G067600
[exp]
5.47 0.9740
AT3G47650 DnaJ/Hsp40 cysteine-rich domai... Potri.018G068300
[exp]
5.47 0.9713
AT1G29070 Ribosomal protein L34 (.1) Potri.011G064800
[exp]
5.74 0.9747
AT5G30510 ARRPS1, RPS1 ribosomal protein S1 (.1) Potri.010G150300
[exp]
6.32 0.9745
AT3G25920 RPL15 ribosomal protein L15 (.1) Potri.008G121100
[exp]
7.00 0.9712
AT4G30845 unknown protein Potri.006G180200
[exp]
8.36 0.9654
AT2G38140 PSRP4 plastid-specific ribosomal pro... Potri.016G113700
[exp]
8.36 0.9683 Pt-PSRP4.1
AT4G14890 FdC2 ferredoxin C 2, 2Fe-2S ferredo... Potri.008G153200
[exp]
11.18 0.9570

Potri.001G390800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.