Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78850 390 / 2e-133 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) AT1G78860 389 / 8e-133 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) AT1G16905 348 / 3e-117 Curculin-like (mannose-binding) lectin family protein (.1) AT1G78830 313 / 8e-103 Curculin-like (mannose-binding) lectin family protein (.1) AT1G78820 307 / 1e-100 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) AT3G12000 87 / 2e-18 S-locus related protein SLR1, putative (S1) (.1) AT4G32300 84 / 3e-17 SD2-5 S-domain-2 5 (.1) AT4G21390 82 / 2e-16 B120 S-locus lectin protein kinase family protein (.1) AT4G00340 77 / 5e-15 RLK4 receptor-like protein kinase 4 (.1) AT1G65800 77 / 1e-14 ARK2 receptor kinase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G110300 [exp] 691 / 0 AT1G78860 404 / 1e-138 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.011G110200 [exp] 560 / 0 AT1G78860 398 / 4e-136 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.011G110500 [exp] 553 / 0 AT1G78850 404 / 8e-139 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.011G110000 [exp] 536 / 0 AT1G78850 424 / 1e-146 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.010G005900 [exp] 486 / 7e-171 AT1G78850 371 / 1e-125 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.011G066200 [exp] 405 / 7e-139 AT1G78830 387 / 2e-131 Curculin-like (mannose-binding) lectin family protein (.1) Potri.001G391200 [exp] 392 / 5e-136 AT1G78860 296 / 2e-98 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.004G061900 [exp] 133 / 2e-33 AT4G32300 402 / 3e-126 S-domain-2 5 (.1) Potri.016G102600 [exp] 116 / 1e-27 AT1G34300 367 / 1e-114 lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022495 [exp] 429 / 2e-148 AT1G78860 363 / 1e-122 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Lus10000579 [exp] 412 / 8e-142 AT1G78850 387 / 7e-132 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Lus10024348 [exp] 102 / 4e-23 AT2G19130 378 / 4e-118 S-locus lectin protein kinase family protein (.1) Lus10024343 [exp] 97 / 4e-21 AT2G19130 379 / 6e-117 S-locus lectin protein kinase family protein (.1) Lus10032944 [exp] 96 / 7e-21 AT2G19130 371 / 1e-115 S-locus lectin protein kinase family protein (.1) Lus10004283 [exp] 91 / 3e-19 AT2G19130 339 / 6e-104 S-locus lectin protein kinase family protein (.1) Lus10003099 [exp] 82 / 1e-16 AT5G18470 296 / 4e-97 Curculin-like (mannose-binding) lectin family protein (.1) Lus10002917 [exp] 82 / 2e-16 AT4G32300 950 / 0.0 S-domain-2 5 (.1) Lus10000249 [exp] 78 / 5e-15 AT4G32300 949 / 0.0 S-domain-2 5 (.1) Lus10031805 [exp] 78 / 6e-15 AT5G60900 530 / 5e-178 receptor-like protein kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01453 [poplar] [flax] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Potri.001G391300.1 pacid=42788125 polypeptide=Potri.001G391300.1.p locus=Potri.001G391300 ID=Potri.001G391300.1.v4.1 annot-version=v4.1 ATGCAATCTTCCACCCCTATGGAACGATCACTGTTCTTCTCTCTTTTCTTGCTCTTCTCAGTATCCATCGTTGCCCAATCTACTGTCCCTTCAAATTCCA CATTTAAGAAAGTCAATACTGGAGAGTGGTCGGAAGCCATTTCAGAGTACAGTTCAGATTTTCGTGCCCTGGACATCTCTGCCTCCGTTTTCCAAGTTTG CTTTTATAACACCACCCCTAATGCATTCACTCTCGCAATACGTATGGGTACGAGGAGGTCACCGGCAGTGAGGCGTTTTGTTTGGGAAGCCAACCGAGGC AACCCAGTTGGTGAAGATGCCACTCTCACTTTTGGTGAGGATGGAAACCTTATCTTGGCCGATGCTGATGGCAGGGTTGCTTGGCAAACCAACACTGCCG ACAAAGGTGTTGTAGGCTTGCAAATGCTACCGAATGGTAACATGGTGCTTCATGACTCTAAGGGCAATTTCATCTGGCAAAGTTTTGACTATCCCACTGA TACTCTTTTGGTGGGTCAATCTCTTCGTGTTGGAGGCGTCACCAGGCTTGTGAGTCGAGCCTCTGACAAAAAGAACACAAACGGAGCCTATAGTCTGGTA TTAGAACCCAAAAGAATAGCCATGTACTATAAGAGTCCAAACTCTCCCAAGCCATACATCTACTACACATCTGATTTGTTTAGCATACAGAAAGGGCGTC TACAATATGTGAGGCTAATCAATTCGGCTAATGAACTGAGTCTTCAGTTCTCTACAGGTGGTGGACCCTTGCTCTCTAAGCCCAATTTCAACAGCACATT GTCATTTCTCCGACTTGGGGTAGATGGCAATCTTAGAGTCTACAGTTTCAACAACCAGGAAACTTCAGCTTCTTGGGATGTGACTTTCACTCTTTTCTCT AAAGATGCAAGTGTTTGGGAAAGTGAGTGTCAATTACCAGAGAAATGTGGCAAGTTTGGGCTCTGTGAGGACAGTCAATGCGTTGGTTGCCCATTACCAA ATGGGCTTGGGAACTGGACCGAGAGCTGTGAACCTGTGAAGGTAACTGTATGTAACAAGAACTTCTATTACTATAAACTAGAAGGGGTTGATCATTCCAT GAGCAAGTATGGAAATGGAAATGGACCCTTGAAGGAGAACGATTGTGAGAAGGAATGTTCCAGTGACTGCAAGTGTTCCGGTTACTTTTACAACACAAAG ACATCTATGTGCTGGATTACTTATGATCTACAAACTCTGACGAGGGTTGCAAATTCTACACATGTGGGTTACATAAAAGTGCCGAATCACCAGTGA
AA sequence Show only first row Show all	>Potri.001G391300.1 pacid=42788125 polypeptide=Potri.001G391300.1.p locus=Potri.001G391300 ID=Potri.001G391300.1.v4.1 annot-version=v4.1 MQSSTPMERSLFFSLFLLFSVSIVAQSTVPSNSTFKKVNTGEWSEAISEYSSDFRALDISASVFQVCFYNTTPNAFTLAIRMGTRRSPAVRRFVWEANRG NPVGEDATLTFGEDGNLILADADGRVAWQTNTADKGVVGLQMLPNGNMVLHDSKGNFIWQSFDYPTDTLLVGQSLRVGGVTRLVSRASDKKNTNGAYSLV LEPKRIAMYYKSPNSPKPYIYYTSDLFSIQKGRLQYVRLINSANELSLQFSTGGGPLLSKPNFNSTLSFLRLGVDGNLRVYSFNNQETSASWDVTFTLFS KDASVWESECQLPEKCGKFGLCEDSQCVGCPLPNGLGNWTESCEPVKVTVCNKNFYYYKLEGVDHSMSKYGNGNGPLKENDCEKECSSDCKCSGYFYNTK TSMCWITYDLQTLTRVANSTHVGYIKVPNHQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G78850			D-mannose binding lectin prote...		Potri.001G391300 [exp]	0	1
AT1G30700			FAD-binding Berberine family p...		Potri.001G462466 [exp]	13.41	0.8042
AT5G05340			Peroxidase superfamily protein...		Potri.013G154400 [exp]	20.32	0.8175	Pt-PRX1.9
AT2G05910			Protein of unknown function (D...		Potri.006G140900 [exp]	27.83	0.8206
AT3G22060			Receptor-like protein kinase-r...		Potri.007G120600 [exp]	30.98	0.8075
AT5G54510		DFL1, GH3.6	DWARF IN LIGHT 1, Auxin-respon...		Potri.011G129700 [exp]	33.27	0.8135	GH3-5,DFL1.2
AT3G50610			unknown protein		Potri.005G136700 [exp]	45.46	0.7819
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.011G030650 [exp]	50.07	0.7974
AT5G43180			Protein of unknown function, D...		Potri.016G137800 [exp]	55.42	0.7970
AT3G10985		WI12, ATWI-12, ...	ARABIDOPSIS THALIANA WOUND-IND...		Potri.019G125900 [exp]	57.06	0.8092
AT3G53480		PIS1, ABCG37, P...	polar auxin transport inhibito...		Potri.010G153700 [exp]	63.74	0.8020

Compare expression of checked genes

Potri.001G391300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.