Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53300 259 / 2e-79 TTL1 tetratricopetide-repeat thioredoxin-like 1 (.1) AT3G58620 258 / 7e-79 TTL4 tetratricopetide-repeat thioredoxin-like 4 (.1) AT2G42580 255 / 7e-78 VIT, TTL3 VHI-INTERACTING TPR CONTAINING PROTEIN, tetratricopetide-repeat thioredoxin-like 3 (.1) AT3G14950 202 / 6e-58 TTL2 tetratricopetide-repeat thioredoxin-like 2 (.1) AT5G65160 151 / 3e-40 TPR14 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) AT5G10090 126 / 2e-31 TPR13 tetratricopeptide repeat 13, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G78120 125 / 2e-31 TPR12 tetratricopeptide repeat 12, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G56440 59 / 3e-09 TPR5 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G04190 58 / 3e-09 TPR3 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12270 51 / 1e-06 Hop1 Hop1, stress-inducible protein, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G111500 [exp] 547 / 0 AT1G53300 707 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1) Potri.005G166300 [exp] 147 / 4e-38 AT5G65160 436 / 5e-145 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.005G076800 [exp] 143 / 4e-37 AT5G65160 619 / 0.0 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.002G094800 [exp] 141 / 1e-36 AT5G65160 451 / 2e-152 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.007G091200 [exp] 138 / 2e-35 AT5G65160 570 / 0.0 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.014G141800 [exp] 55 / 6e-08 AT2G42810 895 / 0.0 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) Potri.013G008400 [exp] 54 / 9e-08 AT1G56440 471 / 1e-163 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G014100 [exp] 54 / 2e-07 AT1G56440 476 / 1e-165 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.010G082900 [exp] 53 / 2e-07 AT1G04190 540 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028154 [exp] 338 / 1e-109 AT1G53300 754 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1) Lus10042854 [exp] 334 / 6e-108 AT1G53300 749 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1) Lus10022500 [exp] 121 / 1e-29 AT5G65160 652 / 0.0 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10016804 [exp] 121 / 2e-29 AT5G65160 635 / 0.0 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10041189 [exp] 54 / 8e-08 AT1G04190 516 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021905 [exp] 53 / 2e-07 AT1G04190 515 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018004 [exp] 51 / 1e-06 AT3G17970 711 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10042001 [exp] 50 / 4e-06 AT3G17970 714 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10028919 [exp] 49 / 9e-06 AT1G62740 890 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10018179 [exp] 48 / 1e-05 AT4G08320 389 / 9e-134 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13414 [poplar] [flax] TPR_11 TPR repeat
Representative CDS sequence Show only first row Show all	>Potri.001G392601.1 pacid=42791534 polypeptide=Potri.001G392601.1.p locus=Potri.001G392601 ID=Potri.001G392601.1.v4.1 annot-version=v4.1 ATGCCACAATCAGCGAAACCCTCCATTGGAGGAGATTTGGACCTCAGCTCACTAACTGATCAACTCCGTGACTCACTCTCTTCACTCGAAGCCAACAAGC CTGATTTTCGTGAACTCGATCTGGGCTCTCCCGTTTCACCTCTCCGAACTCGAGGTGGACTCACCACTAAAACCACCGCCACAACCACAACCACAACGAC GACGACCACCTCCTCCAGCTCCAGCTCCTCCGGATCCGCATCCGGTGCCCAAAACCGACTTCACAAACCCAACAATAACAACCACTCAGGAGAGTTATCG AACTCGAGTGAAAGCAGCCCCACGACTAGCGCCAAGAAGGGTCAACCGGGTCATTCTAGATCCGACTCTTTAACTTACTCAGGTCAAACTGGCAGCCAGA GTGCTGTAAACTCTCCGGTAACTGTTAATGTGTTGCCTACCGGTAACATTTGTCCGTCGGGCAGGATCTTGAAGACAGGCATGGGAATGGTGAATCGGAG TGCGAAACCGGATGTCTTAGGATCCGGGACTGCGAATTATGGTCACGGCAGCATAATGCGGGGCGGGGGGAGCGCAAAATGTGCTAGCTCTGATGTTGTT AATTCAGCAAGCAGGAATGCTTGGAGTGCGCGCGGAGGGAGTGTGGATCCGGAGGAGGTGAAGAAGGCTGGAAATGAGATGTATAAAAAAGGGTGTTTTG GGGAGGCGTTGGGATTGTATGATAAGGCTATTGCTTTGGCACCAGGGAATGCTGCTTACAGGAGTAATAGGGCGGCTGCGTTGATGGGATTGGGAAGAGT TGTGGAGGCTGTGAAAGAGTGTGAGGAGGCTGTTCGGCTGGATCCTAATTATTGGAGAGCACATCAGAGGTTGGGGGCTTTGTTAATTAGGTTAGGACAG GTTGAGAGTGCTAAGAAGCACCTATGCTTCCCAGGGCAGCATCCAGATTCTGCCGAGTTGCATAAGTTGCAATTAGTAGAGAAACATCTTAACAAATGTT CAGATGCCCGGAAGGTTAATGATTGGAAAGGTGCATTAAGGGAAGCTGATGCTGCTATTGCTGCTGGAGCTGATTATTGCCCCCAGCTCTTTATGTGTAG AACTGAAGCTCTTTTGAAGCTCCACCAACTTGAAGATGCTCAATATTGCTTATCAAAAGTAAAGGTTTCACTGAAGCCTGCTCAGCATATGGGGAAGGCC TTAGGCTTGATCCTTCGAACTCTGTTCTTTATTGCAACAGAGCAGCATGTTGGTTTAAGCGTGGACTGTGGGAGAGATCCATTGATGACTGCAATCAAGC TTTAA
AA sequence Show only first row Show all	>Potri.001G392601.1 pacid=42791534 polypeptide=Potri.001G392601.1.p locus=Potri.001G392601 ID=Potri.001G392601.1.v4.1 annot-version=v4.1 MPQSAKPSIGGDLDLSSLTDQLRDSLSSLEANKPDFRELDLGSPVSPLRTRGGLTTKTTATTTTTTTTTTSSSSSSSGSASGAQNRLHKPNNNNHSGELS NSSESSPTTSAKKGQPGHSRSDSLTYSGQTGSQSAVNSPVTVNVLPTGNICPSGRILKTGMGMVNRSAKPDVLGSGTANYGHGSIMRGGGSAKCASSDVV NSASRNAWSARGGSVDPEEVKKAGNEMYKKGCFGEALGLYDKAIALAPGNAAYRSNRAAALMGLGRVVEAVKECEEAVRLDPNYWRAHQRLGALLIRLGQ VESAKKHLCFPGQHPDSAELHKLQLVEKHLNKCSDARKVNDWKGALREADAAIAAGADYCPQLFMCRTEALLKLHQLEDAQYCLSKVKVSLKPAQHMGKA LGLILRTLFFIATEQHVGLSVDCGRDPLMTAIKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53300		TTL1	tetratricopetide-repeat thiore...		Potri.001G392601 [exp]	0	1
AT1G21980		ATPIPK1, ATPIP5...	phosphatidylinositol-4-phospha...		Potri.005G172800 [exp]	2.82	0.8424	Pt-PIP5.1
AT1G03350			BSD domain-containing protein ...		Potri.015G050700 [exp]	5.65	0.8038
AT5G10270		CDKC;1	cyclin-dependent kinase C;1 (....		Potri.006G024600 [exp]	13.41	0.7945	Pt-CDC2.5
AT3G20550	FHA	DDL	DAWDLE, SMAD/FHA domain-contai...		Potri.011G136102 [exp]	22.22	0.7634
AT5G36740			Acyl-CoA N-acyltransferase wit...		Potri.002G051400 [exp]	26.15	0.8045
AT3G15095		HCF243	high chlorophyll fluorescence ...		Potri.001G373100 [exp]	27.03	0.7436
AT5G36740			Acyl-CoA N-acyltransferase wit...		Potri.005G211100 [exp]	29.74	0.7994
AT3G43610			Spc97 / Spc98 family of spindl...		Potri.009G153300 [exp]	34.46	0.7498
AT4G32760			ENTH/VHS/GAT family protein (....		Potri.018G039100 [exp]	34.85	0.7240
AT4G14920			Acyl-CoA N-acyltransferase wit...		Potri.008G152600 [exp]	41.42	0.7731

Compare expression of checked genes

Potri.001G392601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.