Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14980 619 / 0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT1G05380 375 / 6e-110 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1.2) AT5G36740 374 / 3e-109 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT4G14920 364 / 3e-106 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT5G36670 339 / 4e-97 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G58610 266 / 3e-73 PHD finger transcription factor, putative (.1) AT2G37520 172 / 1e-43 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT3G53680 169 / 1e-42 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT5G63900 164 / 2e-42 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G36720 143 / 3e-34 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G087700 [exp] 409 / 3e-120 AT4G14920 805 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.008G152600 [exp] 404 / 5e-118 AT4G14920 769 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.005G211100 [exp] 375 / 7e-108 AT5G36740 635 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.002G051400 [exp] 367 / 1e-105 AT5G36740 625 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.001G153200 [exp] 301 / 1e-88 AT1G05380 340 / 1e-104 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1.2) Potri.009G072600 [exp] 308 / 4e-86 AT5G58610 453 / 1e-139 PHD finger transcription factor, putative (.1) Potri.002G118600 [exp] 267 / 3e-74 AT5G58610 436 / 5e-137 PHD finger transcription factor, putative (.1) Potri.006G083600 [exp] 177 / 3e-45 AT2G37520 932 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.006G120200 [exp] 148 / 7e-36 AT2G36720 848 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006110 [exp] 400 / 4e-117 AT4G14920 868 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10010562 [exp] 394 / 3e-115 AT4G14920 847 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10042602 [exp] 360 / 3e-102 AT5G36740 607 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10022053 [exp] 343 / 7e-97 AT5G36740 617 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10042283 [exp] 297 / 8e-82 AT3G08590 993 / 0.0 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1.2) Lus10015266 [exp] 291 / 5e-80 AT5G58610 558 / 7e-176 PHD finger transcription factor, putative (.1) Lus10007741 [exp] 255 / 7e-71 AT5G58610 323 / 4e-96 PHD finger transcription factor, putative (.1) Lus10018681 [exp] 251 / 1e-69 AT5G58610 308 / 1e-90 PHD finger transcription factor, putative (.1) Lus10012522 [exp] 243 / 3e-68 AT5G58610 285 / 4e-84 PHD finger transcription factor, putative (.1) Lus10025386 [exp] 197 / 1e-51 AT5G58610 271 / 4e-77 PHD finger transcription factor, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF16135 [poplar] [flax] TDBD Tify domain binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G392801.4 pacid=42792131 polypeptide=Potri.001G392801.4.p locus=Potri.001G392801 ID=Potri.001G392801.4.v4.1 annot-version=v4.1 ATGACCAGTTCAGCAATTGATGATTTTCGGGGTGATGGCTTTGAGGGGTCACATCAAGAGCGCTGTATTTTTGCAGATATTTTCTTTGGCAAAGATACTG GTGGGACAGGTAAGAGGAGTATTGATGCTGGAGTTATTAATTTAAAGAGCCAGGACTGTAAGATTGCAGATCCTTCGCTGCATACTAACAATGAATACTC AGCTGTCAGTACTCTTTCTTCTCCTATAAGTTTGTCAATCGAGGATTCTGATGTGAATGAGAATTCTGTAGGGGCTACTGCTTCAGGCTGTTTTACAGAA AGATTTACCTTTGTGGAGGGCACTAGCCAGAATAAGACTGTCAAGCGAATGAAGTTTGCAGTTGATGAACCTTCGGACACTGAACCTGATACATTGAAAG TTCTGACTTCATCCTTACTGCATAAAGAGATTGTTAGTGGTACAGCTGCTGCAGATATGGATTCACTGAGCCAAACAGTACTATTACATTTAGTCGAATC ATCCTCTCAGGGTGTTGTATCCACCAGCTATCTGTTAAAGCAACATGCAAAAATAGACAGAAAAGGTGATGCACGCGAGCCAGATGTTCTGAAGTGCAGT TTGCCAAACTCAGATGGTGTTGCTGGCAAAGCTATTGCTTCACCTGTTTCCCAAGAGAGCTATGCAACAAGGATATTGCTTGCAAGACCTGTAGATGTTG TTGGGAAACCTGGATCCCCTTTAAATGCAGAGGAAAGAGCGAAGGCATTCAATTCGCCAGGATTGGATGTCTCCATTATCTCGAAGACAGATTCTAAGAT GGATCCTCGTCCTTTTCTCCAAAGTCATATCACCCGCTTACTTTCAGCTTTGGGTTGGTGTATTGGAAAGCGCAAGAGACCCAGTCGAAAATATATGGAG TCTATTTATCAATCACCTGAGGGGAGATTAATTCGTGATTTCCCTAAAGTGTGGAGGCTGTGTGGTCAAATTTTGTTCGCAAATGGATACAAGGTGGTGC AGGAAGGCAATGGTAAGGAATGGGCTGATATAAGTCACTTTTGGTCTGATCTCTCAGATACATTGACTACTATTGAGAAAGACATGGATAAATCAGATCT TGCCAAAGCCTTGGCACATCAGTGGAGTATTTTAGATCCCTTTGTTAATGTTGTGTTCATTGATCGGAAGGTTGGCGTACTGAGAAAGGGATGTATGGTT AAAGCTGCACCAAGCTTAGTGAATGATAGAAATGTGAAAAGTGAAGATGGCATTGGAAAGGAGTCTGCTCAGAAAAATTTGTTGGCTTGGCATAGTGATT CTTGTCCGGTCACTAAAAGTGCATCAACAATTTGTGAAGGAAGCTGCCATGACTGTGATGTACAATCTGGCAACAGGACTTTCTCGGAATGCGGACAAGA ATCAATGGTGAAAGGTCAGATGGATGTATCTATTCATATGAATGACAGAGAAGGCATGTGTTCTGATGGGATGGGAAATCAATCTTGCAGCATGTGTAAG GACAGGATAGGCGGTGTGGATATGACTGACTGGCTAACTTGTGGGACAGATTGCACTTCTGCCCAGTTGTGTAGTTGCCAATGTAATGATTTTCCTGTTA CTGCTGGGAACATTATAGTGCATGGGGCGTCTGAATCTGTTTCCCCTCATCAAGACAGCAACTTGGTTGATCCAGATGATGGCACTGGTCATATGGACTC CATCCACCATGATGAGCCAACTTCTGCCCAAGTTGTGACTTCAGGAGTTTTGCAGCAATCCAGATTCAGTGAAGAGGAGGGATTACAGTGCATTCAAGCT TCGAGGTTCAAAACAAGGGATAAAGCAGCTATGAAAAAGATACGTAGAAAGTCCAGAAAAATATCAGAAATCAGATCAACCACATTAAGCCAAAGTGAAA ATATTGATGTGCTTGGCAATCCATTAGAGTCAAACAAAGTTGAAGAGAAGCTTATCAAAAGAACTAAAAAGATCTGCATGAAGTCCTCCCCTTTGGATAA TTGCCTACATCAGGGGGTGAAAAATGGTACAAAATTAAAGAGTACGCATGGCAATAGTTATGGTCCCAAATACAAACAAAAGAAAACAACCGGCTGCCAA ATTGATGATGATGATTTGTTGATTGCAGCCATTATCAAGAACAAAGATTTTAGCCCAGGTGCCACCAGATCTATTTCTAAAAAGAAATCCTGCATATTAA GAGCTGGCTCAAAGCGCAAACGGAAAAAGGGCGGCTGCAGGCTACTCCCAAGAAATCTGGGCAAACTGGGAAAGCATTATGTGGGTGGTAAGTGGTCAAG AATGGGATCTAGGACGGTTTTGTCATGGTTGATAGATGCTGGGGTCTTGTCTGTAAAAGATGTAGTCCAGTACCGAAATCTAAAAGACGATTTTGTGATT AAAGATGGTGTGGTTACCAAGGATGGCATCATGTGTAAGTGCTGCAATATGGTGCTTTCGGTTACCAAGTTTAAGAGTCATGCTGGGTTCAAGCTTAACC GACCATGTTCAAACCTTTTCATGGAATCTGGAAAGCCTTTTACTTTATGTCAGCTGCAAGCATGGTCTGCTGAATATAAGAGCAGGAAAAGTGGTACCCA AGTGGTTCGTGCTGATGAAGATGATAAGAATGATGATTCATGTGGGCTGTGCGGTGATGGTGGGGAGTTGATATGCTGTGATAATTGCCCCTCTACTTTT CATCAAGCTTGCTTGTGTACAGAGGATCTTCCTGAAGGCAGTTGGTATTGCCCGAATTGCACCTGTTGGATATGTGGGGATCTGGTCAATGATAAAGAGG CTTCAAGTTCTGTTGGTGCTTATAAATGTTTGCAGTGTGAGCACAAATATCATGGGGCATGCCAACAAGGAAAACAAACACATGAAGGACTGGTTTCTGA TGCTTGGTTTTGTAGTGGAAGCTGTCAAGAGGTGTACTCTGGTCTTCATTCTCGTGTTGGGATCAATAATCCAATAGCTGATGGCTTTTGTTGGACTCTT CTCAGATGCATTCATGAAGATCAAAAGGTTCTTTCTGCTCAAAGACTTGCCCTCAAGGCAGAATGCAACTCAAAATTAGCTGTTGCTCTTACCATTATGG AGGAATGCTTTCAATCTATGGTAGACCCAAGAACAGGCATAGACATGATACCCCATGCTTTATACAATTGGGGGTCAGATTTTGCTCGTCTAAATTTCTT TGGGTTTTACACTGTGGTGTTGGAGAAAGATGATGTGCTTGTATCTGCAGCATCTGTCAGGGTGCATGGAGTAACAGTTGCAGAGATGCCCCTCATTGCA ACTTGCAGTAACTACCGCCGTCAGGGGATGTGTCGACACCTTATGACTGCTATTGAAGAGATGCTAATTTCCTTCAAGGTGGAAAAGCTTGTTATATCCG CCATCCCAGATTTAGTTGAGACATGGACTAAGGGTTTTGGCTTCATACCGGTGAGTAAAGATGAAAAGCAAAGTCTGAACAAGATAAACTTCATGGTGTT CCCTGGAACAATATTGTTGAAAAAACAGTTGTACAAAACAAAAGAAGCAGACACACAATCAGGCTTGGGTGATGCAGCACCTTTAACTGAAGTAGATATT TGCCCCATGGAGGATCATGTCACTGAGTTGGTGCAGCAATCCAATGAGAACAGCTACCTTGATGAAGTTGGTATCTCAGCAGAGCTCGAACATGGTGAAA GCCAGAATTTGCAAGAATCTGAACCTAGCAGTGAAAGGCAAGGTAACTACCTTGATGAAGTTGGTATCTCAGCAGAGCTCAAACATGTTGAAAGCCAGAA ATTGCAAGAATCTGAACCAAGCAGTGAAGGGGAAACTCATGATGGTGCTGAGGGACTAGGACGAGCACCACGCATGGTAACTAACCTTTCGTCTGAAGTA GGACTCTGTTCTGATGGAATGCCCTTTGTCGAGTCTGACAGAAAATTTTTCCCTAACAAACATGCTGCTAAAAAGGAAGACAAGAAGACGGAAACCCAAG GTAGTGATTTGCAGGAACAACTTTCAAAGCTGTCCCGTGGAGACTTAGTTCCAGCCCTAGGACGAGGCCCAGGTGAAGTGGCCTGTAATGTTCAATGTAT TAGTTATGTTCCTTCTCCGGACACACCATCACAGCAAGTCTGTGAGTTAAATGAGAAATAG
AA sequence Show only first row Show all	>Potri.001G392801.4 pacid=42792131 polypeptide=Potri.001G392801.4.p locus=Potri.001G392801 ID=Potri.001G392801.4.v4.1 annot-version=v4.1 MTSSAIDDFRGDGFEGSHQERCIFADIFFGKDTGGTGKRSIDAGVINLKSQDCKIADPSLHTNNEYSAVSTLSSPISLSIEDSDVNENSVGATASGCFTE RFTFVEGTSQNKTVKRMKFAVDEPSDTEPDTLKVLTSSLLHKEIVSGTAAADMDSLSQTVLLHLVESSSQGVVSTSYLLKQHAKIDRKGDAREPDVLKCS LPNSDGVAGKAIASPVSQESYATRILLARPVDVVGKPGSPLNAEERAKAFNSPGLDVSIISKTDSKMDPRPFLQSHITRLLSALGWCIGKRKRPSRKYME SIYQSPEGRLIRDFPKVWRLCGQILFANGYKVVQEGNGKEWADISHFWSDLSDTLTTIEKDMDKSDLAKALAHQWSILDPFVNVVFIDRKVGVLRKGCMV KAAPSLVNDRNVKSEDGIGKESAQKNLLAWHSDSCPVTKSASTICEGSCHDCDVQSGNRTFSECGQESMVKGQMDVSIHMNDREGMCSDGMGNQSCSMCK DRIGGVDMTDWLTCGTDCTSAQLCSCQCNDFPVTAGNIIVHGASESVSPHQDSNLVDPDDGTGHMDSIHHDEPTSAQVVTSGVLQQSRFSEEEGLQCIQA SRFKTRDKAAMKKIRRKSRKISEIRSTTLSQSENIDVLGNPLESNKVEEKLIKRTKKICMKSSPLDNCLHQGVKNGTKLKSTHGNSYGPKYKQKKTTGCQ IDDDDLLIAAIIKNKDFSPGATRSISKKKSCILRAGSKRKRKKGGCRLLPRNLGKLGKHYVGGKWSRMGSRTVLSWLIDAGVLSVKDVVQYRNLKDDFVI KDGVVTKDGIMCKCCNMVLSVTKFKSHAGFKLNRPCSNLFMESGKPFTLCQLQAWSAEYKSRKSGTQVVRADEDDKNDDSCGLCGDGGELICCDNCPSTF HQACLCTEDLPEGSWYCPNCTCWICGDLVNDKEASSSVGAYKCLQCEHKYHGACQQGKQTHEGLVSDAWFCSGSCQEVYSGLHSRVGINNPIADGFCWTL LRCIHEDQKVLSAQRLALKAECNSKLAVALTIMEECFQSMVDPRTGIDMIPHALYNWGSDFARLNFFGFYTVVLEKDDVLVSAASVRVHGVTVAEMPLIA TCSNYRRQGMCRHLMTAIEEMLISFKVEKLVISAIPDLVETWTKGFGFIPVSKDEKQSLNKINFMVFPGTILLKKQLYKTKEADTQSGLGDAAPLTEVDI CPMEDHVTELVQQSNENSYLDEVGISAELEHGESQNLQESEPSSERQGNYLDEVGISAELKHVESQKLQESEPSSEGETHDGAEGLGRAPRMVTNLSSEV GLCSDGMPFVESDRKFFPNKHAAKKEDKKTETQGSDLQEQLSKLSRGDLVPALGRGPGEVACNVQCISYVPSPDTPSQQVCELNEK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14980			Acyl-CoA N-acyltransferase wit...		Potri.001G392801 [exp]	0	1
AT1G80490		TPR1	TOPLESS-related 1 (.1.2)		Potri.003G030000 [exp]	2.82	0.8074
AT1G11390			Protein kinase superfamily pro...		Potri.011G041500 [exp]	4.89	0.8230
AT2G40980			Protein kinase superfamily pro...		Potri.008G083300 [exp]	5.74	0.7977
AT1G64790		ILA	ILITYHIA (.1.2)		Potri.019G024200 [exp]	9.94	0.8411
AT2G21630			Sec23/Sec24 protein transport ...		Potri.014G178500 [exp]	11.61	0.8063
AT3G10440			Shugoshin C terminus (.1)		Potri.008G032600 [exp]	13.41	0.7934
AT2G21630			Sec23/Sec24 protein transport ...		Potri.002G238500 [exp]	16.43	0.7790
AT1G08620		PKDM7D	Transcription factor jumonji (...		Potri.002G037300 [exp]	20.34	0.8095
AT4G35520		MLH3, ATMLH3	MUTL protein homolog 3 (.1)		Potri.005G101900 [exp]	20.49	0.8149
AT2G39090		APC7, AtAPC7	anaphase-promoting complex 7, ...		Potri.008G215100 [exp]	20.83	0.7917

Compare expression of checked genes

Potri.001G392801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.