Plant FIBer expression Database

Potri.001G393000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G78800 426 / 4e-149 UDP-Glycosyltransferase superfamily protein (.1)
AT1G73370 45 / 9e-05 ATSUS6, SUS6 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2)
AT5G37180 44 / 0.0002 ATSUS5, SUS5 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 5, sucrose synthase 5 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G109000
[exp]
516 / 0 AT1G78800 663 / 0.0 UDP-Glycosyltransferase superfamily protein (.1)
Potri.004G081300
[exp]
44 / 0.0001 AT1G73370 1234 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2)
Potri.017G139100
[exp]
44 / 0.0001 AT5G37180 1231 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 5, sucrose synthase 5 (.1)
Potri.015G029100
[exp]
42 / 0.0004 AT1G73370 1289 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015797
[exp]
465 / 1e-164 AT1G78800 652 / 0.0 UDP-Glycosyltransferase superfamily protein (.1)
Lus10037008
[exp]
432 / 9e-152 AT1G78800 665 / 0.0 UDP-Glycosyltransferase superfamily protein (.1)
Lus10017984
[exp]
42 / 0.001 AT1G73370 1117 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0113 GT-B PF00534 Glycos_transf_1 Glycosyl transferases group 1
CL0113 GT-B PF13439 Glyco_transf_4 Glycosyltransferase Family 4
Representative CDS sequence
>Potri.001G393000.1 pacid=42793718 polypeptide=Potri.001G392902.1.p locus=Potri.001G393000 ID=Potri.001G393000.1.v4.1 annot-version=v4.1
ATGGAGAGAAAATTAAAGATTGGCACCATTCATCCAGACCTTGGAATAGGAGGAGCTGAAAGGTTAATAGTTGATGCTGCTGTTGAACTTGCATCCCTTG
GCCACAATGTTCATGTTCTTACAGCTCATCATGATAAAAACCGATGCCTCGAAGAAACTGTGGCTGGTAAGTTGCGTTTATTTGCATATTTGCGGTGCAT
TTTCGTTGCCCTTTGCGTGCTATTCCTGTGGCCGTCATTTGATGTTATATTAGCTCACCGGGTGGTTTTTTACTGTCATTTTCCGGATTTGTTGCTGGCT
CAACATACAACTGTTCTCTGGAGGTTATATAGGAAACCCATTGATTTCATAGAAGAAATTACAACTGGAATGGCAGATATGATACTTGTTAATAGTAAAT
TCACTGCATCTATGTTCACGAATACATTCAAGCATCTTCATGCACGAGAAATCCAACCTGCTGTTCTTTACCCTGCAGTTAACATGGATCAATTTGATGT
TCCTCATTCCTACAATAGTTCAGAATCTTATTCTTATCTGTTTCATGTGGAAAAGAACATAGAGTTGACAGTTTCTGCCTTTGCCAGACTTCATACACTT
GCAGAACATGCCCTTCAAAGTCAAAGTCTAACTGAAGCTACTTTGACCATTGCTGGCGGATATGATAATCGACTGAGAGAGAATGTTGAGTATCTGATGG
AACCTAGACGCCTGGCAGAAAGGGAAAGAGTCTCTCATCGGGTAAACTTCATTACGTCCTGCTCAACAGCTGAAAGAAATAAACTTCTTTCACAGTGCCT
GATGAACACTTTGGAGGCAGTGGCAGCTCATAAGCCTGTGATTGCATGCAATAGTGGTGGTCCTGTGGAGACTGTTAAGGATGGAGAAACAGGATTTCTT
TGCAACCCTACTCCTGAAGAGTTCTCTCTGGCAATGGCTAAACTCATTCAGGATCCCCAGATGGCAAGCAGAATGGGCGGAAGAGGCCCGGAAGCATGTT
GCTGA
AA sequence
>Potri.001G393000.1 pacid=42793718 polypeptide=Potri.001G392902.1.p locus=Potri.001G393000 ID=Potri.001G393000.1.v4.1 annot-version=v4.1
MERKLKIGTIHPDLGIGGAERLIVDAAVELASLGHNVHVLTAHHDKNRCLEETVAGKLRLFAYLRCIFVALCVLFLWPSFDVILAHRVVFYCHFPDLLLA
QHTTVLWRLYRKPIDFIEEITTGMADMILVNSKFTASMFTNTFKHLHAREIQPAVLYPAVNMDQFDVPHSYNSSESYSYLFHVEKNIELTVSAFARLHTL
AEHALQSQSLTEATLTIAGGYDNRLRENVEYLMEPRRLAERERVSHRVNFITSCSTAERNKLLSQCLMNTLEAVAAHKPVIACNSGGPVETVKDGETGFL
CNPTPEEFSLAMAKLIQDPQMASRMGGRGPEACC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G78800 UDP-Glycosyltransferase superf... Potri.001G393000
[exp]
0 1
AT2G39550 GGB, ATGGT-IB, ... GERANYLGERANYLTRANSFERASE-I BE... Potri.010G206001
[exp]
1.73 0.8479
AT2G42490 Copper amine oxidase family pr... Potri.015G082900
[exp]
3.87 0.8367
AT4G27190 NB-ARC domain-containing disea... Potri.001G426200
[exp]
4.00 0.8787
AT2G17820 AHK1, ATHK1 histidine kinase 1 (.1) Potri.005G111700
[exp]
6.92 0.8272 ATHK1.3
AT2G45040 Matrixin family protein (.1) Potri.003G077400
[exp]
7.07 0.8126
AT1G78060 Glycosyl hydrolase family prot... Potri.005G168400
[exp]
8.00 0.8449
Potri.015G071100
[exp]
9.53 0.8077
AT3G10120 unknown protein Potri.006G213100
[exp]
9.59 0.7937
AT3G22520 unknown protein Potri.010G086700
[exp]
9.89 0.8071
AT4G25520 SLK1 SEUSS-like 1 (.1) Potri.001G109901
[exp]
11.61 0.7701

Potri.001G393000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.