Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18810 41 / 6e-05 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G389150 [exp] 140 / 8e-45 ND / Potri.011G108700 [exp] 137 / 2e-43 AT4G15140 42 / 9e-06 unknown protein Potri.011G070400 [exp] 89 / 3e-24 ND / Potri.004G061100 [exp] 79 / 2e-20 ND / Potri.006G008000 [exp] 41 / 3e-05 AT4G15140 86 / 3e-21 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007307 [exp] 78 / 2e-19 ND / Lus10029254 [exp] 78 / 2e-18 ND / Lus10010477 [exp] 38 / 0.0005 AT4G15140 73 / 1e-16 unknown protein Lus10003804 [exp] 37 / 0.0008 AT4G15140 85 / 5e-21 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G393001.1 pacid=42793210 polypeptide=Potri.001G393001.1.p locus=Potri.001G393001 ID=Potri.001G393001.1.v4.1 annot-version=v4.1 ATGGAAAATATATCTGAGGCATCACCATCACCATCACCAGGGAGTTCTTCCTTGGCAAGTCTAAGTATTCAAATGGTCTCGAAATCAGTCTCCGAGAGAC TTCTTGGTAAGTTCTTTGATGCATCTCAATATGACTTCGATTATGAGCAAAGTGGTCTTTGGTCTCCACCAATACCTGCCAGAAGGGTTTTCTTGGCTTC ACCAGCAGGCCATATTTACTCCCAAGGTGAGTTTTTCTCGGAGCTCAAGAAAGGAAAGAGAGCGTGTAGAAGGCGCATTGCTTGCTTCAATGCCTTTTGG TGCACTTCAAGACGACAACCTTGA
AA sequence Show only first row Show all	>Potri.001G393001.1 pacid=42793210 polypeptide=Potri.001G393001.1.p locus=Potri.001G393001 ID=Potri.001G393001.1.v4.1 annot-version=v4.1 MENISEASPSPSPGSSSLASLSIQMVSKSVSERLLGKFFDASQYDFDYEQSGLWSPPIPARRVFLASPAGHIYSQGEFFSELKKGKRACRRRIACFNAFW CTSRRQP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.001G393001 [exp]	0	1
AT1G63310			unknown protein		Potri.001G452900 [exp]	2.00	0.9915
AT4G05430			Carbohydrate-binding X8 domain...		Potri.019G007800 [exp]	2.82	0.9908
					Potri.018G040000 [exp]	3.16	0.9853
AT1G77700			Pathogenesis-related thaumatin...		Potri.001G210400 [exp]	4.24	0.9884
AT2G21080			unknown protein		Potri.018G002700 [exp]	6.00	0.9808
AT5G41470			Nuclear transport factor 2 (NT...		Potri.002G070800 [exp]	6.32	0.9855
AT4G05430			Carbohydrate-binding X8 domain...		Potri.019G012000 [exp]	6.48	0.9850
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Potri.006G256700 [exp]	7.48	0.9850
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Potri.006G256600 [exp]	7.74	0.9795	Pt-PME2.7
AT5G35740			Carbohydrate-binding X8 domain...		Potri.006G016800 [exp]	8.36	0.9838

Compare expression of checked genes

Potri.001G393001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.