Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16670 470 / 1e-164 Protein kinase superfamily protein (.1) AT3G09010 344 / 2e-115 Protein kinase superfamily protein (.1) AT3G14840 347 / 2e-109 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G56140 345 / 1e-108 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56130 343 / 4e-108 Leucine-rich repeat transmembrane protein kinase (.1) AT1G07650 337 / 7e-106 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53430 337 / 8e-106 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G56120 337 / 9e-106 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53440 336 / 2e-105 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53420 330 / 2e-103 Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G112000 [exp] 590 / 0 AT1G16670 476 / 2e-168 Protein kinase superfamily protein (.1) Potri.011G142100 [exp] 481 / 4e-169 AT1G16670 530 / 0.0 Protein kinase superfamily protein (.1) Potri.001G438400 [exp] 477 / 2e-167 AT1G16670 529 / 0.0 Protein kinase superfamily protein (.1) Potri.010G221400 [exp] 370 / 5e-126 AT1G16670 379 / 9e-131 Protein kinase superfamily protein (.1) Potri.006G128500 [exp] 360 / 8e-122 AT1G16670 353 / 3e-120 Protein kinase superfamily protein (.1) Potri.004G040200 [exp] 358 / 7e-121 AT3G09010 436 / 1e-152 Protein kinase superfamily protein (.1) Potri.011G049600 [exp] 357 / 2e-120 AT3G09010 427 / 2e-149 Protein kinase superfamily protein (.1) Potri.016G114800 [exp] 342 / 1e-114 AT3G09010 486 / 3e-172 Protein kinase superfamily protein (.1) Potri.004G063600 [exp] 342 / 2e-113 AT1G07650 479 / 4e-160 Leucine-rich repeat transmembrane protein kinase (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026207 [exp] 485 / 2e-170 AT1G16670 541 / 0.0 Protein kinase superfamily protein (.1) Lus10042460 [exp] 477 / 1e-167 AT1G16670 536 / 0.0 Protein kinase superfamily protein (.1) Lus10028149 [exp] 451 / 3e-157 AT1G16670 434 / 6e-152 Protein kinase superfamily protein (.1) Lus10042851 [exp] 442 / 3e-153 AT1G16670 429 / 3e-149 Protein kinase superfamily protein (.1) Lus10026503 [exp] 350 / 3e-118 AT1G16670 369 / 2e-126 Protein kinase superfamily protein (.1) Lus10019933 [exp] 350 / 5e-118 AT1G16670 364 / 1e-124 Protein kinase superfamily protein (.1) Lus10011193 [exp] 332 / 8e-111 AT3G09010 416 / 6e-145 Protein kinase superfamily protein (.1) Lus10004825 [exp] 332 / 1e-110 AT3G09010 496 / 5e-176 Protein kinase superfamily protein (.1) Lus10018481 [exp] 330 / 4e-109 AT3G09010 414 / 7e-143 Protein kinase superfamily protein (.1) Lus10031374 [exp] 347 / 1e-108 AT1G07650 1221 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.001G393200.4 pacid=42789376 polypeptide=Potri.001G393200.4.p locus=Potri.001G393200 ID=Potri.001G393200.4.v4.1 annot-version=v4.1 ATGGTCCAATTCAATTCTGGGTTCAATGCGATTATTGTTGCCATCATCATTAGACTGACAAAGGCCTTTATACCTTTTCCCTTTCGAAGTGTCTGGTTAA GCAAGAATAGGCTTATGGGAAAGGAATTTTATAATGACATGATTTATGGCTTATTTTTGCAGGGCTGGGACTCGATTTTGGTGGAGGCATTCATTCGTCT AAACAATCTGGTGATGACTTGTTTTTTTTCATTTTGCAAAGGGAAGGGAGTTTCAAGAGCTACTAGACAAACTCTAGAAGCTGATGATGAGGTTTCGGGG TCACAGAACATTTGCTGTTACACTCATAGGGAATTGCAAATGGCAACTGAAAACTTTAATTCAGCCAATAAAGTTGGAGAGGGAGGTTTCGGTTCTGTCT ACAAGGGAATACTTAAAGATGGCACTGTGGCTGCCATAAAGGTACTGTCAGCTGAATCAAGGCAAGGTTTACGGGAGTTCTTAACAGAAATAAAAGTGAT AGCAGATATAGAGCACAATAACCTGGTTAAATTGTATGGTTATTGTGCAGATGGAAACCATAGAATTTTGGTCTATGGCTACCTTGAGAATAACAGCCTT GCACAAACACTTCTCGGTGGAGGCCATAGCAGTATCAAATTCAGTTGGTCTACAAGGCGCAAAATATGCGTTGGAGTTGCACGAGGGCTTGCATTCCTTC ATGAGGAAGTCCAGCCACATATTGTTCATAGGGATATTAAAGCAAGTAACATTCTCCTTGATAGTGAACTCGAGCCCAAAATATCAGACTTTGGTCTTGC AAAACTTTTCCCATCCCACCTGACTCATATAAGCACACGAGTTGCTGGAACTACAGGATATCTGGCTCCAGAATATGCAATTCGAGGTCAGCTGACAAGG AAAGCTGATATTTACAGTTTCGGTGTTCTATTGTTGGAAATTGTTAGTGGGAGGTCCAACACAAATAGGCGGTTACCCACAGAAGAGCAATGCCTACTTA AAAGGGTATGGGTATTTTATGAGAAAGGGGAGCTGGTTAACTTGGTGGACACATCGTTGGGAAGGGATTATGATGCTGAAGAGGCTTGCAAGTACCTGAA GATAGGTCTTCTTTGCACCCAGGAAGTGTCAAAGTTGCGTCCCTTGATGTCTACTGTTGTCTCGATGTTAATGGGTGAGATGGATGTGAAAGACAAGATA TCAAGGCCTGGCTTGCTGTCTGAATTCAGGAGTCTCAAAGGTGACAAAAAGCAGAAAGACAGAGACCAGAATGACAAGTGGGAAACGAAGAAATCATCTC CAAATTCAAGCAAGCTCGAAGATTCGTCTTCATCATCAGGAATGGCCACTTCATATGCTTCCATGACCTTCAACTCAATATATGACCGGAGCAATTAA
AA sequence Show only first row Show all	>Potri.001G393200.4 pacid=42789376 polypeptide=Potri.001G393200.4.p locus=Potri.001G393200 ID=Potri.001G393200.4.v4.1 annot-version=v4.1 MVQFNSGFNAIIVAIIIRLTKAFIPFPFRSVWLSKNRLMGKEFYNDMIYGLFLQGWDSILVEAFIRLNNLVMTCFFSFCKGKGVSRATRQTLEADDEVSG SQNICCYTHRELQMATENFNSANKVGEGGFGSVYKGILKDGTVAAIKVLSAESRQGLREFLTEIKVIADIEHNNLVKLYGYCADGNHRILVYGYLENNSL AQTLLGGGHSSIKFSWSTRRKICVGVARGLAFLHEEVQPHIVHRDIKASNILLDSELEPKISDFGLAKLFPSHLTHISTRVAGTTGYLAPEYAIRGQLTR KADIYSFGVLLLEIVSGRSNTNRRLPTEEQCLLKRVWVFYEKGELVNLVDTSLGRDYDAEEACKYLKIGLLCTQEVSKLRPLMSTVVSMLMGEMDVKDKI SRPGLLSEFRSLKGDKKQKDRDQNDKWETKKSSPNSSKLEDSSSSSGMATSYASMTFNSIYDRSN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G16670			Protein kinase superfamily pro...		Potri.001G393200 [exp]	0	1
AT4G19040		EDR2	ENHANCED DISEASE RESISTANCE 2 ...		Potri.008G213000 [exp]	2.23	0.8264
AT1G53430			Leucine-rich repeat transmembr...		Potri.001G385750 [exp]	4.00	0.8199
AT4G16700		PSD1	phosphatidylserine decarboxyla...		Potri.003G078300 [exp]	4.00	0.7828
AT1G03670			ankyrin repeat family protein ...		Potri.018G078200 [exp]	12.24	0.8063
AT4G27300			S-locus lectin protein kinase ...		Potri.011G125201 [exp]	17.14	0.7897
AT2G25930		PYK20, ELF3	EARLY FLOWERING 3, hydroxyprol...		Potri.006G233800 [exp]	22.84	0.7571	ELF3.3
AT1G07650			Leucine-rich repeat transmembr...		Potri.001G386000 [exp]	23.74	0.7934
AT3G14840			Leucine-rich repeat transmembr...		Potri.001G385200 [exp]	25.80	0.7741
AT1G03670			ankyrin repeat family protein ...		Potri.018G077500 [exp]	28.80	0.8002
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125301 [exp]	32.40	0.7666

Compare expression of checked genes

Potri.001G393200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.