Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53270 756 / 0 ABCG10 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) AT2G13610 553 / 0 ABCG5 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) AT4G25750 490 / 1e-167 ABCG4 ATP-binding cassette G4, ABC-2 type transporter family protein (.1) AT5G52860 486 / 6e-166 ABCG8 ATP-binding cassette G8, ABC-2 type transporter family protein (.1) AT5G19410 469 / 6e-159 ABCG23 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) AT3G55090 358 / 2e-114 ABCG16 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) AT3G55110 355 / 9e-114 ABCG18 ATP-binding cassette G18, ABC-2 type transporter family protein (.1) AT3G55100 350 / 4e-112 ABCG17 ATP-binding cassette G17, ABC-2 type transporter family protein (.1) AT5G13580 350 / 1e-111 ABCG6 ATP-binding cassette G6, ABC-2 type transporter family protein (.1) AT3G55130 346 / 6e-110 ABCG19, ATWBC19 ATP-binding cassette G19, white-brown complex homolog 19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G112100 [exp] 1090 / 0 AT1G53270 753 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) Potri.013G117700 [exp] 786 / 0 AT1G53270 666 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) Potri.005G064300 [exp] 572 / 0 AT2G13610 900 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Potri.007G104801 [exp] 561 / 0 AT2G13610 949 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Potri.009G070100 [exp] 484 / 3e-164 AT5G19410 707 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Potri.015G027600 [exp] 462 / 3e-156 AT5G52860 733 / 0.0 ATP-binding cassette G8, ABC-2 type transporter family protein (.1) Potri.010G213400 [exp] 374 / 3e-120 AT3G55090 1014 / 0.0 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) Potri.006G215100 [exp] 369 / 6e-119 AT3G53510 860 / 0.0 ATP-binding cassette G20, ABC-2 type transporter family protein (.1) Potri.008G047900 [exp] 360 / 1e-114 AT3G55090 1008 / 0.0 ATP-binding cassette G16, ABC-2 type transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000737 [exp] 482 / 1e-163 AT5G19410 754 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Lus10029905 [exp] 476 / 7e-161 AT2G13610 743 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Lus10033637 [exp] 477 / 1e-160 AT5G19410 735 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Lus10017683 [exp] 469 / 2e-158 AT5G19410 731 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Lus10027545 [exp] 468 / 2e-158 AT5G52860 781 / 0.0 ATP-binding cassette G8, ABC-2 type transporter family protein (.1) Lus10004496 [exp] 467 / 3e-157 AT2G13610 729 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Lus10008500 [exp] 459 / 1e-154 AT5G19410 758 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Lus10023465 [exp] 364 / 2e-116 AT2G39350 1064 / 0.0 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) Lus10025281 [exp] 357 / 1e-113 AT2G37360 1035 / 0.0 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10033663 [exp] 323 / 1e-101 AT2G39350 454 / 6e-151 ATP-binding cassette G1, ABC-2 type transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0181 [poplar] [flax] ABC-2 PF01061 [poplar] [flax] ABC2_membrane ABC-2 type transporter
Representative CDS sequence Show only first row Show all	>Potri.001G393300.1 pacid=42787974 polypeptide=Potri.001G393300.1.p locus=Potri.001G393300 ID=Potri.001G393300.1.v4.1 annot-version=v4.1 ATGGAATTGCCAGTGAAGGCACCGGTTTCTGGTGGCCAGAAAACCTCATACAGACTAGAAACCAAAAATCTGTCCTACAAGTTATGCAGCAAACTTGACG AGCTTGATTTTATTTACTGTGGAGGGACCCCAAGAAGAGCTCCTAAATTCATTCTGAGGGATGTAAACTGTGCAGCTAGTCCTGGCGAGATTACTGCGAT TGCTGGTCCTAGTGGAGCAGGGAAGACCACGTTACTAGAGATCCTTGCTGGAAAGATACCTTCATGTAAAGTGTCTGGTCAAGTGCTGGTAAATAGCCAG CCAATGAATGCCAAACATTTCCGGAGATTATCCGGGTTTGTCACTCAAGATGATTCTCTATTTCCATTGCTTACAGTTAAAGAAACACTATTGTACAGTG CACTTTTAAGGCTACCAGGAGGGCGAAAAGAGGCCGCTAGTAGGGTGAGAAGGCTACTGAAGGAGCTCGGACTCGAACATGTTTCGGATTCAAGGATAGG TGAGGGATCAGACTGGGGCATTTCTGGTGGTGAAAGGCGTAGAGTTTCGATTGGAGTTGATTTAGTCCACGACCCTGCTGTTGTTTTCATCGATGAACCA ACTTCAGGTCTGGATTCAGCATCAGCTCTTCATGTAGCGACTCTGCTCAAGTCTATGGTGTTGAATCAGGGTAAGACCATTGTTTTAACTATCCACCAAC CCAGTTTTCGAATACTTGAGCTCTTTGATCGGCTTGTTTTGCTTTCCAACGGATATGCTGTCCATGATGGCTCACTGCATTTCCTTGAAGAGAGACTAAG GTTTTCTGGTCATCAAATTCCTCTCCATGTCAATGTGCTTGAGTTTTCTATTGATGTTATAGAAAGCCTGTCTAAGCAAAATTCAGTGTCTCTCAACAAT CAATGCCCTCATGAGATCAGACATAATGAAGGCCACATCGCGAGGACTCTATACTTCAACAATCATCAAGAAAAACCTCTCTGCTATCCCAATTCTATAT TGGAGGAGGTTTCGATACTAGGACAAAGATTTTGCAGCAACATTTTCAGAACCAAGCAACTATTTGCCGCAAGAGTAATACAAGCACTGGTGGCAGGACT AATACTTGGAACCATATTCTTGAATGTTGGAAAGAAAACAGGACAGGTCGCTTTGCAGACTCGAATCGGATTCTTTGCCTTCAGCCTCACCTTCTTGCTA TCTTCCTCAACTGAAGGGCTGCCTATTTTCTTGCAAGAAAGAAGAATACTAATGAGAGAGACTTCAAGAGGAGCCTACAGGGTTTCTTCTTATGTCCTAT CTAACACCCTCATCTTTCTTCCTTTCCTTTTAATGGTTGCTCTTCTCTACTCCACCCCAGTTTATTGGCTAGTTGGTTTGAGGATGTCAATCTACGGATT TCTTTACTTCTCTCTAGTGGTGTGGATGGTGATTTTGATGTCAAATTCTTTCGTTGCTTGTTTCAGTGCTCTAGTGCCTAACTTCATAATGGGGACATCA GTTATTTCAGGATTAATGGGATCTTTCTTCCTATTTTCTGGGTACTTCATAACAAAGAGTAAGATTCCTAGTTACTGGGTTTTCATGCACTATTTGAGTT TGTTCAAGTACCCATTTGAATGTTTCTTAATAAATGAATATGGAGGAGAGCAAGGCAACTTGAGGTGCTTAGTGTATGATAAAGGGAGATGCAATCTTTA TGGAAGCGGGTTCCTAAGACAGCAAGGTCTAAAAGATTCACAAAAATGGAGCAATTTAGCTGTGATGCTTGGTTTTATCATTGGGTACAGAGTGCTATGC TTTGTGATTTTGTGGTTTAGATGTTACAGAAGAAGATGA
AA sequence Show only first row Show all	>Potri.001G393300.1 pacid=42787974 polypeptide=Potri.001G393300.1.p locus=Potri.001G393300 ID=Potri.001G393300.1.v4.1 annot-version=v4.1 MELPVKAPVSGGQKTSYRLETKNLSYKLCSKLDELDFIYCGGTPRRAPKFILRDVNCAASPGEITAIAGPSGAGKTTLLEILAGKIPSCKVSGQVLVNSQ PMNAKHFRRLSGFVTQDDSLFPLLTVKETLLYSALLRLPGGRKEAASRVRRLLKELGLEHVSDSRIGEGSDWGISGGERRRVSIGVDLVHDPAVVFIDEP TSGLDSASALHVATLLKSMVLNQGKTIVLTIHQPSFRILELFDRLVLLSNGYAVHDGSLHFLEERLRFSGHQIPLHVNVLEFSIDVIESLSKQNSVSLNN QCPHEIRHNEGHIARTLYFNNHQEKPLCYPNSILEEVSILGQRFCSNIFRTKQLFAARVIQALVAGLILGTIFLNVGKKTGQVALQTRIGFFAFSLTFLL SSSTEGLPIFLQERRILMRETSRGAYRVSSYVLSNTLIFLPFLLMVALLYSTPVYWLVGLRMSIYGFLYFSLVVWMVILMSNSFVACFSALVPNFIMGTS VISGLMGSFFLFSGYFITKSKIPSYWVFMHYLSLFKYPFECFLINEYGGEQGNLRCLVYDKGRCNLYGSGFLRQQGLKDSQKWSNLAVMLGFIIGYRVLC FVILWFRCYRRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53270		ABCG10	ATP-binding cassette G10, ABC-...		Potri.001G393300 [exp]	0	1	3
AT4G20390			Uncharacterised protein family...		Potri.011G154900 [exp]	1.73	0.9867
AT5G58860		CYP86A1	"cytochrome P450, family 86, s...		Potri.009G043700 [exp]	2.44	0.9842	CYP86A19,Pt-CYP86.4
AT1G68850			Peroxidase superfamily protein...		Potri.010G134500 [exp]	3.46	0.9797
AT3G18400	NAC	ANAC058	NAC domain containing protein ...		Potri.012G056300 [exp]	3.46	0.9800
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Potri.007G036300 [exp]	3.87	0.9750
AT5G41040			HXXXD-type acyl-transferase fa...		Potri.001G326300 [exp]	5.29	0.9735
AT5G19410		ABCG23	ATP-binding cassette G23, ABC-...		Potri.009G070100 [exp]	5.38	0.9371
AT5G23190		CYP86B1	"cytochrome P450, family 86, s...		Potri.005G092200 [exp]	5.47	0.9744
AT1G29000			Heavy metal transport/detoxifi...		Potri.014G178800 [exp]	5.65	0.9714
AT5G58860		CYP86A1	"cytochrome P450, family 86, s...		Potri.001G249700 [exp]	8.36	0.9573	CYP86.5

Compare expression of checked genes

Potri.001G393300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.