Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15000 263 / 2e-84 cobalt ion binding (.1) AT3G06790 184 / 9e-56 plastid developmental protein DAG, putative (.1.2) AT1G72530 154 / 3e-45 plastid developmental protein DAG, putative (.1.2) AT2G35240 136 / 1e-37 plastid developmental protein DAG, putative (.1) AT2G33430 135 / 2e-37 DAL1, DAL differentiation and greening-like 1 (.1) AT1G32580 134 / 9e-37 plastid developmental protein DAG, putative (.1) AT1G11430 132 / 3e-36 plastid developmental protein DAG, putative (.1) AT1G53260 130 / 2e-35 unknown protein AT4G20020 100 / 6e-23 unknown protein AT5G44780 90 / 3e-19 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G112200 [exp] 338 / 2e-113 AT3G15000 245 / 2e-77 cobalt ion binding (.1) Potri.010G007200 [exp] 179 / 7e-54 AT3G06790 269 / 6e-91 plastid developmental protein DAG, putative (.1.2) Potri.011G032900 [exp] 132 / 4e-36 AT1G11430 261 / 1e-88 plastid developmental protein DAG, putative (.1) Potri.008G169900 [exp] 132 / 6e-36 AT1G32580 284 / 2e-97 plastid developmental protein DAG, putative (.1) Potri.010G068300 [exp] 130 / 2e-35 AT1G32580 314 / 2e-109 plastid developmental protein DAG, putative (.1) Potri.003G015100 [exp] 100 / 1e-22 AT4G20020 239 / 2e-74 unknown protein Potri.004G218800 [exp] 69 / 3e-12 AT4G20020 182 / 8e-51 unknown protein Potri.010G237200 [exp] 62 / 3e-10 AT3G20930 429 / 5e-150 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.004G218650 [exp] 61 / 6e-10 AT4G20020 187 / 5e-53 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032618 [exp] 277 / 1e-89 AT3G15000 301 / 2e-99 cobalt ion binding (.1) Lus10014696 [exp] 275 / 6e-89 AT3G15000 291 / 1e-95 cobalt ion binding (.1) Lus10043130 [exp] 271 / 1e-86 AT3G15000 284 / 6e-92 cobalt ion binding (.1) Lus10032619 [exp] 208 / 8e-65 AT3G15000 223 / 3e-71 cobalt ion binding (.1) Lus10016825 [exp] 185 / 6e-56 AT3G06790 286 / 1e-97 plastid developmental protein DAG, putative (.1.2) Lus10007615 [exp] 132 / 8e-36 AT1G11430 314 / 2e-109 plastid developmental protein DAG, putative (.1) Lus10018398 [exp] 129 / 3e-35 AT1G11430 309 / 2e-108 plastid developmental protein DAG, putative (.1) Lus10011789 [exp] 130 / 4e-35 AT1G32580 341 / 5e-120 plastid developmental protein DAG, putative (.1) Lus10023744 [exp] 129 / 6e-35 AT1G32580 342 / 2e-120 plastid developmental protein DAG, putative (.1) Lus10036589 [exp] 98 / 2e-22 AT4G20020 271 / 1e-87 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G393400.5 pacid=42792829 polypeptide=Potri.001G393400.5.p locus=Potri.001G393400 ID=Potri.001G393400.5.v4.1 annot-version=v4.1 ATGGCGACTTCACTCTTCACTCGCTCTCTCTTCCTCCAAAAACCCACCTCACAAACCCTAATTTCCTCCCTCCTCTCTCGCGCCTTCACTTCCCACTCCT CCACCTCCACCGCCTGTTCCTCCTCTCTCCTCCGCCGATTCCTCCGTCCTCTCTCCTCTGCAACCACCATCAATCGCTCCGTCTCTCGGATTTCAATCAG GTCGTTTTCTTCCAGTCAGAAATCGTCTTCCCTCAACGACCCAAGCCCTAACTGGTCTAATAGACCTCCAAAAGAGACTATTTTGCTTGATGGCTGTGAT TTCGAGCATTGGCTCGTCGTTATGGAAAAGCCTGAGGGAGACCCCACTCGTGACGAGATCATCGATTCTTATATTAAAACTCTTGCTCAAGTTGTTGGCA GTGAGGAAGAAGCAAGGAGGAAGATCTATTCAGTTTCTACTCGATGCTACTATGCCTTTGGAGCTCTGGTGCCTGAAGAGGTTTCTTACAAGATTAAAGA ATTGAAAAATGTCCGCTGGGTTCTTCCCGATTCATACCTGGATGTGAAGAACAAAGATTATGGAGGGGAGCCATTTATTGATGGGAAAGCTGTGCCCTAT GACCCAAAATACCATGAGGAATGGATTAGGAACAATGCGAGGGCAAATGAAAGAAATAGGCGCAATGATCGACCTCGTAACGTCGACAGATCAAGGAACT TTGACAGAAGAATGGAAAACATGCAGCCGCGAGGTGGAGCTCCACCTCCTCCTATGGCTAATCAGGCTATGCGAAACCCTGCTCCCAACATGGCTGGACA ACCACAAAACATGGGCAGACAAGGTGCACCACCGCAGCCACAAAACAACTACAGGGGACCAGGTGGACCGCCACCTAACAACTATAATATGGGTGGACCA GGTGGACCGCCACCTAACAACTATATGGGTGGGCAGCAGAACAATATGAGTAGGGTGCCACATAACATGCCCATGCAAAACTACATTCCTCCACAGAACA ACATGCCCCCGCAGAACAATATGCCCCCTCAAAACTACACCCCTCAACAACACAACTACATTCCTCCGCAGAACAACATGCCTCCACATAACAACACAGG AGGATGGTCCAATGACATGCCTGGAAACATGCAACACAACATCCAGAATGAGCCTGCCAATGGAGGCTACCAAGGTGGACCATCAAACTACCATAACAAA TACCCTCCAAGCCAGGATGCTGTGTAG
AA sequence Show only first row Show all	>Potri.001G393400.5 pacid=42792829 polypeptide=Potri.001G393400.5.p locus=Potri.001G393400 ID=Potri.001G393400.5.v4.1 annot-version=v4.1 MATSLFTRSLFLQKPTSQTLISSLLSRAFTSHSSTSTACSSSLLRRFLRPLSSATTINRSVSRISIRSFSSSQKSSSLNDPSPNWSNRPPKETILLDGCD FEHWLVVMEKPEGDPTRDEIIDSYIKTLAQVVGSEEEARRKIYSVSTRCYYAFGALVPEEVSYKIKELKNVRWVLPDSYLDVKNKDYGGEPFIDGKAVPY DPKYHEEWIRNNARANERNRRNDRPRNVDRSRNFDRRMENMQPRGGAPPPPMANQAMRNPAPNMAGQPQNMGRQGAPPQPQNNYRGPGGPPPNNYNMGGP GGPPPNNYMGGQQNNMSRVPHNMPMQNYIPPQNNMPPQNNMPPQNYTPQQHNYIPPQNNMPPHNNTGGWSNDMPGNMQHNIQNEPANGGYQGGPSNYHNK YPPSQDAV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G15000			cobalt ion binding (.1)		Potri.001G393400 [exp]	0	1
AT3G49240		EMB1796	embryo defective 1796, Pentatr...		Potri.012G015400 [exp]	1.00	0.9630
AT4G30930		WRKY32, NFD1	NUCLEAR FUSION DEFECTIVE 1, Ri...		Potri.015G095700 [exp]	4.47	0.9086	Pt-RPL21.5
AT3G49320			Metal-dependent protein hydrol...		Potri.015G007900 [exp]	4.89	0.9133
AT4G31930			Mitochondrial glycoprotein fam...		Potri.018G021600 [exp]	5.38	0.8768
AT3G13160			Tetratricopeptide repeat (TPR)...		Potri.011G032312 [exp]	6.00	0.9117
AT3G49660		AtWDR5a	human WDR5 \(WD40 repeat\) hom...		Potri.007G009500 [exp]	7.48	0.9195
AT1G53345			unknown protein		Potri.015G030300 [exp]	8.66	0.8883
AT5G59500			protein C-terminal S-isoprenyl...		Potri.001G242400 [exp]	8.94	0.9022
AT5G64670			Ribosomal protein L18e/L15 sup...		Potri.001G324300 [exp]	9.21	0.8856
AT4G20020			unknown protein		Potri.003G015100 [exp]	12.00	0.9020

Compare expression of checked genes

Potri.001G393400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.