Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53250 124 / 5e-32 unknown protein AT1G53800 75 / 3e-14 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G112300 [exp] 412 / 8e-143 AT1G53250 139 / 2e-37 unknown protein Potri.003G073400 [exp] 71 / 4e-13 AT1G53800 426 / 3e-143 unknown protein Potri.001G161900 [exp] 68 / 3e-12 AT1G53800 433 / 8e-146 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028136 [exp] 157 / 3e-44 AT1G53250 139 / 1e-37 unknown protein Lus10042840 [exp] 152 / 2e-41 AT1G53250 144 / 1e-38 unknown protein Lus10003930 [exp] 77 / 5e-15 AT1G53800 392 / 2e-130 unknown protein Lus10037460 [exp] 77 / 7e-15 AT1G53800 387 / 3e-126 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G393700.2 pacid=42790935 polypeptide=Potri.001G393700.2.p locus=Potri.001G393700 ID=Potri.001G393700.2.v4.1 annot-version=v4.1 ATGTCATTCTTTCATTTGAGATTGTCTGTTCCCCATTTAACATGCAGCCATGTTCCAAACAATCTTTTATGGCCAACTCTGGGTTATGTGTTGGAATACA CACATTTTCAACCAAATGTACGACAGTCAAACAATTGTACATCGATCGGGAAGAAAATATGTCCCGCATATGCTTCTATTAGTACCTTCCCAAGAATTGA TGATTTTGTAGCCTTGCAAATCAGTGATGATGTCGGAGAGACTACAGGTTCTAGCAAGCATTACCAGTCAAAAATTCCTCTTGATCCAGCTGAGAAGCAG ACTATGAGTGAGGAGGTTCAACCGGATGGATGCCAATACTCTGCAGAAATTATCAATGACCTTCCCAGAAAGAGAAGAAAAAGAAAGAAAAAACATGGGA ACAAAGGGAGGATTCCATGGAACAAAGGCAGAAAACATACTGCAGAGACCCGTGCACTGATAAAGCAAAGAACAATTGAAGCCTTGACAAACCCCCAGGT TAGGAAGAAGATGTCAGGGCATCCCCGTGCTCATAATGAAGCGATCAGGGCTAAGATAAGTTCTTCGCTCAGACAACTCTGGGGTAAACGTTTGAGATGG AAAAGGCTGAGAGAGAATTTTTTTCTGTCATGGACTAAAAGAATAGCAATAGCTGCTAAGGAAGGAAGCATTGACCAACAAGAGCTAGACTGGGATGGGT ACGAAAAAATAAAAAAAGAAATAACTCTCAAGCAGCTTCAGGGTGCCATGGAAAAGGCAAAGGGAGAGGAGATTGCAAAGAGAAAAGTTGAGAGGGAAAA AAAGGAAAAAGAAGAAAAGATGGAAAGGGTTGCTCAGAAGAGAAAAGAGCGGGAAGAGAAAGCAATGGAAAGAGAAGAAACAAAGAGGAAGGCACACAGA CAATCAAAGAAAAAAACAGAAGAGTCATCTGTTGCCCGAAAGTTGACACTTAAGAAGAGATTAACAAAGATTCGAAAAAAGAAACCCACTGATGATCAGA TGATTAGTCAAGGGGCATCATCGCCTTCCCTTAGCCGAGCTTGGGAGAAACTGAATGCAGAGATTAGTAAGAGAGAAAAGGTTCCAAGAGAAACTTCACT TGCGGATCAGATCCAAGCTGCCAAAAATAAAAAAACTGAATCCAATACTAGGAAAGCTTTGGCAGCACCATCTTTTCCACTCGTTTGCTGA
AA sequence Show only first row Show all	>Potri.001G393700.2 pacid=42790935 polypeptide=Potri.001G393700.2.p locus=Potri.001G393700 ID=Potri.001G393700.2.v4.1 annot-version=v4.1 MSFFHLRLSVPHLTCSHVPNNLLWPTLGYVLEYTHFQPNVRQSNNCTSIGKKICPAYASISTFPRIDDFVALQISDDVGETTGSSKHYQSKIPLDPAEKQ TMSEEVQPDGCQYSAEIINDLPRKRRKRKKKHGNKGRIPWNKGRKHTAETRALIKQRTIEALTNPQVRKKMSGHPRAHNEAIRAKISSSLRQLWGKRLRW KRLRENFFLSWTKRIAIAAKEGSIDQQELDWDGYEKIKKEITLKQLQGAMEKAKGEEIAKRKVEREKKEKEEKMERVAQKRKEREEKAMEREETKRKAHR QSKKKTEESSVARKLTLKKRLTKIRKKKPTDDQMISQGASSPSLSRAWEKLNAEISKREKVPRETSLADQIQAAKNKKTESNTRKALAAPSFPLVC

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53250			unknown protein		Potri.001G393700 [exp]	0	1
AT4G34090			unknown protein		Potri.009G099600 [exp]	2.44	0.9399
AT1G72640			NAD(P)-binding Rossmann-fold s...		Potri.003G063800 [exp]	6.48	0.9426
AT5G10470		KAC1, KCA1	KINESIN CDKA;1 ASSOCIATED 1, k...		Potri.007G010700 [exp]	8.94	0.8642
AT3G48200			unknown protein		Potri.015G079000 [exp]	10.90	0.9109
AT5G19500			Tryptophan/tyrosine permease (...		Potri.001G224950 [exp]	11.61	0.9244
AT3G59780			Rhodanese/Cell cycle control p...		Potri.013G128300 [exp]	16.49	0.9098
AT3G18890		AtTic62	translocon at the inner envelo...		Potri.009G111323 [exp]	17.32	0.9231
AT1G64430			Pentatricopeptide repeat (PPR)...		Potri.003G140800 [exp]	21.81	0.9031
AT3G01480		ATCYP38, CYP38	ARABIDOPSIS CYCLOPHILIN 38, cy...		Potri.001G351400 [exp]	23.81	0.9085
AT1G02910		LPA1	LOW PSII ACCUMULATION1, tetrat...		Potri.002G206300 [exp]	25.09	0.8931

Compare expression of checked genes

Potri.001G393700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.