Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	NCED3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14440 883 / 0 SIS7, ATNCED3, STO1, NCED3 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) AT1G78390 855 / 0 ATNCED9, NCED9 nine-cis-epoxycarotenoid dioxygenase 9 (.1) AT1G30100 813 / 0 ATNCED5, NCED5 nine-cis-epoxycarotenoid dioxygenase 5 (.1) AT4G18350 751 / 0 ATNCED2, NCED2 nine-cis-epoxycarotenoid dioxygenase 2 (.1) AT3G24220 627 / 0 ATNCED6, NCED6 nine-cis-epoxycarotenoid dioxygenase 6 (.1) AT4G19170 366 / 3e-119 CCD4, NCED4 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) AT3G63520 342 / 7e-111 ATNCED1, ATCCD1, CCD1 carotenoid cleavage dioxygenase 1 (.1) AT4G32810 110 / 3e-25 MAX4, CCD8, ATCCD8 MORE AXILLARY BRANCHING 4, carotenoid cleavage dioxygenase 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G112400 [exp] 1063 / 0 AT3G14440 868 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) Potri.011G084100 [exp] 849 / 0 AT1G30100 799 / 0.0 nine-cis-epoxycarotenoid dioxygenase 5 (.1) Potri.003G176300 [exp] 671 / 0 AT3G24220 718 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Potri.019G093400 [exp] 384 / 7e-126 AT4G19170 803 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.005G069100 [exp] 376 / 7e-123 AT4G19170 812 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.009G152200 [exp] 369 / 1e-120 AT4G19170 546 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.009G151900 [exp] 365 / 9e-119 AT4G19170 548 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.009G152300 [exp] 358 / 1e-116 AT4G19170 539 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.001G265900 [exp] 342 / 9e-111 AT3G63520 880 / 0.0 carotenoid cleavage dioxygenase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026185 [exp] 721 / 0 AT3G14440 682 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) Lus10023673 [exp] 635 / 0 AT3G24220 706 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Lus10011750 [exp] 589 / 0 AT3G24220 657 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Lus10042482 [exp] 390 / 5e-132 AT1G78390 374 / 4e-125 nine-cis-epoxycarotenoid dioxygenase 9 (.1) Lus10035696 [exp] 373 / 1e-121 AT4G19170 813 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Lus10029513 [exp] 351 / 1e-111 AT3G63520 901 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10019710 [exp] 337 / 2e-108 AT3G63520 842 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10016410 [exp] 333 / 1e-102 AT3G63520 842 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10042481 [exp] 296 / 5e-98 AT1G78390 271 / 2e-88 nine-cis-epoxycarotenoid dioxygenase 9 (.1) Lus10008443 [exp] 228 / 5e-69 AT4G19170 315 / 1e-102 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03055 [poplar] [flax] RPE65 Retinal pigment epithelial membrane protein
Representative CDS sequence Show only first row Show all	>Potri.001G393800.1 pacid=42788942 polypeptide=Potri.001G393800.1.p locus=Potri.001G393800 ID=Potri.001G393800.1.v4.1 annot-version=v4.1 ATGGCTTCAACAGCAACAGCAGTGCCTTCAACCTTGGGCTCCTCGTCATTTTCGTCTTCTTTAAACAGGCCTGGTAGAAAGCCCAATGTCAACATCAATT GCTCACTCCAAACTCCTTCCATTCTCCATTTCCCAAAGCAATCCACTGCGTGCACACCATCTACTACTATCCCCAATCCCACCACCAGACACCCAAAACA AAACACGCCCTCTCCTGTTGTGGTTGTGCCCCAAAAGCAACAGCAGCAAAAGCAATGGAATTTCTTACAAAGAACAGCAGCTATGGCTTTAGATGCTGTT GAAACTGCCTTGGTTTCACATGAACGTCAGCACCCTTTGCCCAAAACAGCTGACCCCAGAGTCCAAATCTCTGGCAACTTCGCTCCGGTACCGGAACAGC CCGTCGTTCACAATTTACCGGTCACCGGGGAAATCCCAGATAGCATTCAAGGTGTTTATCTAAGAAACGGAGCCAATCCACTGCACGAGCCAGTAGCTGG TCACCATTTTTTCGATGGTGATGGCATGGTTCATGCTGTTCAATTCAACAAGGGCTCAGTCAGCTATTCTAGCAGATTCACTGAGACTAATAGGCTAGTT CAAGAACGTGACTTGGGACGTCCTTTATTCCCAAAAGCCATAGGTGAGCTACATGGTCATTCAGGCATAGCTAGACTCTTGCTTTTTTATGCCCGTGGAG CTTTTGGTATTGTTGATCCTAGCCATGGAACTGGTGTTGCAAACGCTGGTCTTGTTTACTTTGATGGTCACTTACTTGCAATGTCTGAAGATGATTTGCC ATACCATGTTCGTGTACTGCCCTCTGGTGACCTTAAGACAGTTGGTCGTTATGATTTTGATGGTCAGCTTAAGACAACAATGATTGCTCATCCAAAAGTT GATCCAGTTTCAGGTGAATTGTTTGCACTTAGTTATGATGTTGTTCAAAAGCCTTACCTCAAGTACTTCAGATTCTCCCCGGATGGAAAAAAGTCACCTG ATGTTGAAATCTCACTTGATCAACCTACTATGATGCATGATTTTGCAATCACAGAGAGGTTTGTTGTGGTTCCTGATCAGCAAGTTGTGTTCAAATTGCC TGAAATGATTCGGGGAGGGTCTCCGGTGATTTATGACAAGAATAAGATGGCAAGGTTTGGGATTTTGGACAAGAATGCCACTGATGCTTCCAATATGAGG TGGATTGAAACACCTGACTGTTTCTGTTTCCATCTTTGGAACGCTTGGGAGGAGCCTGAGACTGATGAGGTTGTTGTGATTGGATCATGTATGACCCCAC CAGACTCCATTTTCAATGAATGTGATGAGAGTTTGAAAAGTGTGTTATCAGAAATTAGGCTCAATTTGAAGACTGGCAAGTCAACTCGCCGTCCAATCAT GTCTGAAGCTGATCAGGTCAATTTAGAAGCTGGAATGGTGAACCGGAACTTGCTCGGTCGAAAGACCCGGTTCGCTTACTTAGCACTTGCTGAGCCATGG CCTAAGGTTTCAGGTTTTGCTAAGGTAGACCTCTCAACTGGGGAGGTACACAAGCACACTTACGGAGACCAGAAATTTGGCGGAGAGCCCTTGTTTCTTC CACGAGACCCCAATTCGGAGAGGGAAGATGACGGGTACATTTTAGCTTTCGTGCATGATGAGAAGGAGTGGAAATCGGAGCTACAAATTGTGAATGCAAT GAATTTAAAGTTAGAAGCCACAGTTAAGATTCCATCTAGAGTTCCATATGGTTTTCATGGCACATTTATTGGTGCCAAGGATTTGGAGAAGCAGGCCTAG
AA sequence Show only first row Show all	>Potri.001G393800.1 pacid=42788942 polypeptide=Potri.001G393800.1.p locus=Potri.001G393800 ID=Potri.001G393800.1.v4.1 annot-version=v4.1 MASTATAVPSTLGSSSFSSSLNRPGRKPNVNINCSLQTPSILHFPKQSTACTPSTTIPNPTTRHPKQNTPSPVVVVPQKQQQQKQWNFLQRTAAMALDAV ETALVSHERQHPLPKTADPRVQISGNFAPVPEQPVVHNLPVTGEIPDSIQGVYLRNGANPLHEPVAGHHFFDGDGMVHAVQFNKGSVSYSSRFTETNRLV QERDLGRPLFPKAIGELHGHSGIARLLLFYARGAFGIVDPSHGTGVANAGLVYFDGHLLAMSEDDLPYHVRVLPSGDLKTVGRYDFDGQLKTTMIAHPKV DPVSGELFALSYDVVQKPYLKYFRFSPDGKKSPDVEISLDQPTMMHDFAITERFVVVPDQQVVFKLPEMIRGGSPVIYDKNKMARFGILDKNATDASNMR WIETPDCFCFHLWNAWEEPETDEVVVIGSCMTPPDSIFNECDESLKSVLSEIRLNLKTGKSTRRPIMSEADQVNLEAGMVNRNLLGRKTRFAYLALAEPW PKVSGFAKVDLSTGEVHKHTYGDQKFGGEPLFLPRDPNSEREDDGYILAFVHDEKEWKSELQIVNAMNLKLEATVKIPSRVPYGFHGTFIGAKDLEKQA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14440		SIS7, ATNCED3, ...	SALT TOLERANT 1, SUGAR INSENSI...		Potri.001G393800 [exp]	0	1	NCED3.1
AT1G07630		PLL5	pol-like 5 (.1)		Potri.009G030600 [exp]	5.38	0.5925
AT3G66654			Cyclophilin-like peptidyl-prol...		Potri.010G144500 [exp]	20.00	0.5302
AT5G52830	WRKY	ATWRKY27, WRKY2...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.004G072000 [exp]	33.49	0.4870
AT4G37900			Protein of unknown function (d...		Potri.015G042800 [exp]	37.81	0.4971
AT5G35430			Tetratricopeptide repeat (TPR)...		Potri.006G065600 [exp]	51.17	0.4705
AT1G28440		HSL1	HAESA-like 1 (.1)		Potri.011G058100 [exp]	67.86	0.4516
AT4G25390			Protein kinase superfamily pro...		Potri.012G131900 [exp]	70.99	0.4839
AT1G59610		DRP2B, CF1, ADL...	Dynamin related protein 2B, dy...		Potri.019G068700 [exp]	80.77	0.4691
AT4G09580			SNARE associated Golgi protein...		Potri.013G113000 [exp]	95.32	0.4395
AT3G57530		ATCPK32, CDPK32...	calcium-dependent protein kina...		Potri.006G052900 [exp]	132.22	0.4392	CPK14.1

Compare expression of checked genes

Potri.001G393800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.