Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20010 270 / 5e-88 PTAC9, OSB2 ORGANELLAR SINGLE-STRANDED DNA BINDING PROTEIN 2, plastid transcriptionally active 9 (.1.2) AT1G31010 257 / 3e-83 OSB4 organellar single-stranded DNA binding protein 4 (.1) AT5G44785 241 / 3e-76 OSB3 organellar single-stranded DNA binding protein 3 (.1.2) AT1G47720 84 / 2e-18 OSB1 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G035600 [exp] 103 / 2e-24 AT1G47720 158 / 6e-46 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Potri.005G218100 [exp] 97 / 9e-23 AT1G47720 114 / 6e-30 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Potri.002G045100 [exp] 90 / 3e-20 AT1G47720 112 / 2e-29 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014728 [exp] 106 / 5e-26 AT1G47720 106 / 3e-27 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Lus10018763 [exp] 95 / 7e-22 AT1G47720 109 / 3e-28 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Lus10024852 [exp] 94 / 1e-21 AT1G47720 110 / 2e-28 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Lus10021767 [exp] 95 / 2e-21 AT1G47720 124 / 1e-31 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Lus10002722 [exp] 50 / 7e-07 AT5G44785 57 / 2e-09 organellar single-stranded DNA binding protein 3 (.1.2) Lus10032760 [exp] 0 / 1 AT1G47720 74 / 2e-15 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [poplar] [flax] OB PF00436 [poplar] [flax] SSB Single-strand binding protein family
Representative CDS sequence Show only first row Show all	>Potri.001G394200.2 pacid=42792276 polypeptide=Potri.001G394200.2.p locus=Potri.001G394200 ID=Potri.001G394200.2.v4.1 annot-version=v4.1 ATGGCGATGAAGAATTCACTGTGCAGATGCAGAGTACTTGCAAAAATCGCTACCTCACAACCAACTACAAGGCGAATCTCTCCTCCACTAATTCTCCTGC TTCAACAATCATCTTGTTACTCCACCAACGAAAAGGAGCACAACCCACCAACAACTACACTAAAAAAAACACCACCTTTATACAAGAAATCACCGTCTTC TACAGATTTTCCAAGGCCCAAAGAAATCCCATTTCAAGCAAAGGTTGCTAATTCCATTAACTTAATTGGGTATATCGATATGCCTATTCAAACCCAAGTT TCATCTCCTGATGAAAAGTTTCGGGCTGCCACTGTTATTACCCAGGAACCTTCTTATCATTCTCCTGCTCTTCGGATTCCAATAATATTTGAAGGTGATT TGGCCCATATTGCTGCTTCACACTTGAAGAAAGGAGATTTTGTCTACATAGATGGGCAGTTAAGTACTGACCCCCCTCCTTTCCCTGAGATGCAGGATCA AACCCAAGTTCAGGTTTTGGTGAACAGTATCAACTTTATTGAGGGGTCTTTCCAAGTGAAGAAAAGTATACTCGAGCAGCAACTAGAAGTGCCCTTAGAT GATGATGCCAGCATGAAGAGAAAAGGTGAATCTGGATCGAATTCCTGGACAGACCTTCTTGAAAATCCAAATCAGTGGTGGGATTATCGTAGTAGTAAGC GCAGTGGATTGGTAAAACCAAAGCACCCAGATTTTAAACACAAGAATAACAACCAGTCCGTCTGGCTTACTGGGGCACCAAGTTGGATTTTTTCAGGACT TGAGAAGGTGAAATTTGATGTTAAGACTGCCCTACCAACACAAACAAAGCAGCAAAAAGAGGAAGAATGCTGGAAGGACTTGGTGGAAAACCCTCATAAA TGGTGGGACAACAGGGTTGACAAGAAAAACCCAAAATCTCCGGATTTCAAGCACAAAGAAACTGGTGAAGGATTGTGGCTTGACACATCACCAGCTTGGG TGCTCCCAAAGTTGCCGCCTACAAAAGGTGCAGAAAATGTTGCTGGCACTGAGGGATACAATGCTCTATTGAGCCAAGGAAGGACATAA
AA sequence Show only first row Show all	>Potri.001G394200.2 pacid=42792276 polypeptide=Potri.001G394200.2.p locus=Potri.001G394200 ID=Potri.001G394200.2.v4.1 annot-version=v4.1 MAMKNSLCRCRVLAKIATSQPTTRRISPPLILLLQQSSCYSTNEKEHNPPTTTLKKTPPLYKKSPSSTDFPRPKEIPFQAKVANSINLIGYIDMPIQTQV SSPDEKFRAATVITQEPSYHSPALRIPIIFEGDLAHIAASHLKKGDFVYIDGQLSTDPPPFPEMQDQTQVQVLVNSINFIEGSFQVKKSILEQQLEVPLD DDASMKRKGESGSNSWTDLLENPNQWWDYRSSKRSGLVKPKHPDFKHKNNNQSVWLTGAPSWIFSGLEKVKFDVKTALPTQTKQQKEEECWKDLVENPHK WWDNRVDKKNPKSPDFKHKETGEGLWLDTSPAWVLPKLPPTKGAENVAGTEGYNALLSQGRT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G20010		PTAC9, OSB2	ORGANELLAR SINGLE-STRANDED DNA...		Potri.001G394200 [exp]	0	1
AT4G20020			unknown protein		Potri.003G015100 [exp]	1.41	0.9527
AT1G52640			Pentatricopeptide repeat (PPR)...		Potri.004G102700 [exp]	2.44	0.9482
AT5G37570			Pentatricopeptide repeat (PPR-...		Potri.006G207500 [exp]	3.31	0.9534
AT1G78930			Mitochondrial transcription te...		Potri.007G001800 [exp]	3.46	0.9406
AT4G14050			Pentatricopeptide repeat (PPR)...		Potri.001G321700 [exp]	4.58	0.9364
AT2G03880		REME1	required for efficiency of mit...		Potri.004G208000 [exp]	5.47	0.9399
AT3G23710		AtTic22-III	translocon at the inner envelo...		Potri.002G236000 [exp]	7.74	0.9298
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.001G369900 [exp]	8.48	0.9338
AT2G37310			Pentatricopeptide repeat (PPR)...		Potri.006G216100 [exp]	9.16	0.9369
AT3G49660		AtWDR5a	human WDR5 \(WD40 repeat\) hom...		Potri.007G009500 [exp]	10.00	0.9325

Compare expression of checked genes

Potri.001G394200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.