Plant FIBer expression Database

Potri.001G394300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G16570 617 / 0 UDP-Glycosyltransferase superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014357
[exp]
662 / 0 AT1G16570 662 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2)
Lus10026065
[exp]
658 / 0 AT1G16570 646 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2)
Lus10031569
[exp]
253 / 1e-79 AT1G16570 242 / 2e-75 UDP-Glycosyltransferase superfamily protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0113 GT-B PF13579 Glyco_trans_4_4 Glycosyl transferase 4-like domain
CL0113 GT-B PF13692 Glyco_trans_1_4 Glycosyl transferases group 1
Representative CDS sequence
>Potri.001G394300.2 pacid=42793661 polypeptide=Potri.001G394300.2.p locus=Potri.001G394300 ID=Potri.001G394300.2.v4.1 annot-version=v4.1
ATGGGGAAAAGAGGGAGGGCATGCGTGGTGGTATTGGGAGATATAGGCCGGAGCCCTCGAATGCAGTATCATGCTCTTTCCCTTGCTCGTCAGGCATCTC
TTCAAGTTGACATTGTTGCTTATGGAGGTTCTGAACCCCATATGGCATTGCGGGAGAATCAATCTATCCATATCCACAAAATGAAACAGTGGCCAGCAAT
TCCGCAGGGGTTGCCGAAGATGTTTAAGCCATTCATGCTTTTACTTAAGCCGTTATTTCAGTTTCTTATGCTTCTTTGGTATTTGTGTGTCAAAATACCG
CCACCCGATGTGTTCCTTGTGCAGAATCCTCCGTCTGTTCCAACCCTGGTAGCTGTAAAATGGGCAAGCTGGTTGAGAAATGCCAAGTTTATTGTCGATT
GGCATAATTTTGGTTATACTTTGCTAGCATTATCGCTTGGAAGAAATAGTCGATTTGTGACAGTATATCGTTGGTTTGAGAGGCATTATGGGAAGATGGC
TCATGGTTCCCTATGTGTAACAAGGGCTATGCAACATGAATTGACTCAAAACTGGGGAATTAAAGCTGCAGTTCTATATGATCAGCCACCTGAGTTTTTT
CATCCTGCCTCACTCGAGGAGAAACATAAGTTATTCTGCAGGTTAGGTAAACACATCAGTGAGTCCCAAGGTGTTCATGATTGTGCCAGCCATGGAGCTG
TGGGAATGGGTAGCCCTAATCTAAATGAGACTTTATTTACAACCATGGTTGCTGATGATATTTTCTTAAAGCCAAATAGGCCTGCTCTTGTTGTAAGCAG
TACAAGCTGGACAGCAGATGAAGATTTTGGCATTCTTCTTGAGGCAGCAGTTATGTATGATAGACGAGTTGCTGCTATTCTAAATGAAGATGATTCTACT
GTGGAAGTTCTTGGGAATGAAATGTCAGCTGGAAAGGAATGTTTGTACCCTAGGTTGTTATTCATCATTACAGGTAAAGGGCCAGAAAAAGAAAAATATG
AAGAAAAAATAAGACGGTTACATCTTAAGCGTGTTGCATTTCGTACCATGTGGTTGTCAGCTGAGGATTATCCATTGCTTCTAGGTTCGGCAGACCTTGG
AGTGTGCTTGCATACTTCATCATCAGGATTGGACCTTCCCATGAAGGTCGTGGACATGTTTGGTTGTGGACTACCTGTTTGCGCTGTCGCCTACTCTTGC
ATCAAGGAGCTCGTGAAAGTTGAGAAAAATGGTCTCCTCTTCTCATCATCTTCAGAATTAGCTGATGAACTTTTGATGCTGTTTAAGGGTTTTCCAGAAG
AATGTGATGCACTGAAGCTGCTAAGAAATGGTGCACTAGAAATGGGTTCTTCAAGGTGGGCTACCGAGTGGGAAGAGCATGCTAAGCCATTAATATCAGA
GGTTATTTCTCAGAACCTGGGGTAA
AA sequence
>Potri.001G394300.2 pacid=42793661 polypeptide=Potri.001G394300.2.p locus=Potri.001G394300 ID=Potri.001G394300.2.v4.1 annot-version=v4.1
MGKRGRACVVVLGDIGRSPRMQYHALSLARQASLQVDIVAYGGSEPHMALRENQSIHIHKMKQWPAIPQGLPKMFKPFMLLLKPLFQFLMLLWYLCVKIP
PPDVFLVQNPPSVPTLVAVKWASWLRNAKFIVDWHNFGYTLLALSLGRNSRFVTVYRWFERHYGKMAHGSLCVTRAMQHELTQNWGIKAAVLYDQPPEFF
HPASLEEKHKLFCRLGKHISESQGVHDCASHGAVGMGSPNLNETLFTTMVADDIFLKPNRPALVVSSTSWTADEDFGILLEAAVMYDRRVAAILNEDDST
VEVLGNEMSAGKECLYPRLLFIITGKGPEKEKYEEKIRRLHLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVAYSC
IKELVKVEKNGLLFSSSSELADELLMLFKGFPEECDALKLLRNGALEMGSSRWATEWEEHAKPLISEVISQNLG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G16570 UDP-Glycosyltransferase superf... Potri.001G394300
[exp]
0 1
AT5G09900 RPN5A, MSA, EMB... REGULATORY PARTICLE NON-ATPASE... Potri.005G087100
[exp]
3.60 0.8355
AT3G03890 FMN binding (.1.2) Potri.013G057700
[exp]
4.00 0.8074
AT3G02700 NC domain-containing protein-r... Potri.004G078700
[exp]
14.28 0.7495
AT3G13062 Polyketide cyclase/dehydrase a... Potri.007G002700
[exp]
17.66 0.7240
AT3G24740 Protein of unknown function (D... Potri.002G216600
[exp]
18.33 0.7980
AT1G10630 ATARFA1F ADP-ribosylation factor A1F (.... Potri.005G007300
[exp]
25.69 0.7997
AT1G51200 A20/AN1-like zinc finger famil... Potri.006G056500
[exp]
29.93 0.7964
AT2G40110 Yippee family putative zinc-bi... Potri.010G190000
[exp]
31.36 0.7604
AT4G08455 BTB/POZ domain-containing prot... Potri.005G183600
[exp]
34.20 0.7321
AT1G09160 Protein phosphatase 2C family ... Potri.013G011600
[exp]
34.94 0.7738

Potri.001G394300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.