Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14420 668 / 0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) AT3G14415 657 / 0 Aldolase-type TIM barrel family protein (.1.2.3) AT4G18360 632 / 0 Aldolase-type TIM barrel family protein (.1.2) AT3G14130 455 / 6e-161 Aldolase-type TIM barrel family protein (.1) AT3G14150 445 / 8e-157 Aldolase-type TIM barrel family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G112700 [exp] 711 / 0 AT3G14420 669 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) Potri.004G065200 [exp] 663 / 0 AT3G14420 651 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) Potri.003G069600 [exp] 439 / 2e-154 AT3G14130 502 / 2e-179 Aldolase-type TIM barrel family protein (.1) Potri.003G069400 [exp] 439 / 2e-154 AT3G14130 529 / 0.0 Aldolase-type TIM barrel family protein (.1) Potri.003G069300 [exp] 423 / 4e-148 AT3G14130 518 / 0.0 Aldolase-type TIM barrel family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013725 [exp] 662 / 0 AT3G14420 675 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) Lus10005590 [exp] 662 / 0 AT3G14420 675 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) Lus10038507 [exp] 652 / 0 AT4G18360 665 / 0.0 Aldolase-type TIM barrel family protein (.1.2) Lus10023302 [exp] 644 / 0 AT4G18360 664 / 0.0 Aldolase-type TIM barrel family protein (.1.2) Lus10042495 [exp] 455 / 7e-162 AT4G18360 461 / 1e-164 Aldolase-type TIM barrel family protein (.1.2) Lus10013171 [exp] 440 / 1e-154 AT3G14130 521 / 0.0 Aldolase-type TIM barrel family protein (.1) Lus10008133 [exp] 433 / 6e-152 AT3G14130 518 / 0.0 Aldolase-type TIM barrel family protein (.1) Lus10038144 [exp] 424 / 8e-150 AT4G18360 435 / 4e-154 Aldolase-type TIM barrel family protein (.1.2) Lus10013173 [exp] 216 / 6e-70 AT3G14130 246 / 7e-82 Aldolase-type TIM barrel family protein (.1) Lus10013724 [exp] 165 / 1e-50 AT3G14420 170 / 2e-53 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [poplar] [flax] TIM_barrel PF01070 [poplar] [flax] FMN_dh FMN-dependent dehydrogenase
Representative CDS sequence Show only first row Show all	>Potri.001G394400.1 pacid=42789153 polypeptide=Potri.001G394400.1.p locus=Potri.001G394400 ID=Potri.001G394400.1.v4.1 annot-version=v4.1 ATGGAGATAACCAATGTCACGGAGTACGAGGCCATCGCTAAGCAGAAGTTGCCAAAGATGGTCTATGACTATTATGCTTCTGGTGCAGAGGACCAGTGGA CTCTAGCAGAAAACAGAAATGCATTCTCAAGAATTTTGTTTCGACCCCGTATTCTTATTGATGTGAGCAAAATAGACATGGCCACCACTGTCTTGGGATT CAAAATATCAATGCCTATTATGATTGCTCCAACTGCCATGCAGAAAATGGCTCATCCTGAAGGGGAGTACGCAACAGCAAGAGCTGCATCGGCTGCTGGG ACGATCATGACATTGTCCTCGTGGGCTACATCCAGCGTTGAAGAGGTTGCATCCACTGGACCTGGCATCCGCTTTTTCCAGCTCTATGTGTACAAGGACA GGAATGTCGTTGCTCAGCTTGTCAGAAGAGCTGAAAGGGCAGGTTTCAAGGCTATTGCTCTTACAGTTGATACCCCAAGGTTGGGCCGCAGGGAGGCTGA CATCAAGAACAGATTTACTCTGCCACCATTTTTGACATTGAAGAACTTTGAAGGTTTGGACCTTGGAAAAATGGACAAGGCTGCTGACTCTGGACTTGCG TCGTATGTTGCTGGTCAAATTGATCGTACACTGAGCTGGAAGGACGTGGAGTGGCTTCAGACAATCACCAAACTGCCAATTCTAGTGAAGGGTGTACTCA CTGCTGAGGATGCAAGGCTTTCAGTTCAAGCTGGAGCAGCAGGGATTATTGTGTCGAATCACGGTGCTCGCCAACTCGATTATGTCCCTTCCACTATTAT GGCGCTGGAAGAGGTTGTCAAGGCTGCACAAGGACGAGTTCCAGTGTTCTTGGATGGTGGTGTAAGGCGTGGAACTGATGTCTTCAAGGCATTGGCGCTC GGAGCCTCTGGCATATTCATTGGCCGACCAGTGGTCTTTTCACTGGCTTCTGAAGGAGAGACTGGTGTGAGAAAAGTACTTCAAATGCTGCGTGAGGAGT TTGAACTTACTATGGCGTTAAGTGGTTGCCGTTCCCTCAAGGAAATCACTCGTGCCCACATTGTAGCCGATTGGGACCATCCTCTCAATCGCCTAGCTCC AAGGTTATAG
AA sequence Show only first row Show all	>Potri.001G394400.1 pacid=42789153 polypeptide=Potri.001G394400.1.p locus=Potri.001G394400 ID=Potri.001G394400.1.v4.1 annot-version=v4.1 MEITNVTEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVSKIDMATTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAG TIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFEGLDLGKMDKAADSGLA SYVAGQIDRTLSWKDVEWLQTITKLPILVKGVLTAEDARLSVQAGAAGIIVSNHGARQLDYVPSTIMALEEVVKAAQGRVPVFLDGGVRRGTDVFKALAL GASGIFIGRPVVFSLASEGETGVRKVLQMLREEFELTMALSGCRSLKEITRAHIVADWDHPLNRLAPRL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14420			Aldolase-type TIM barrel famil...		Potri.001G394400 [exp]	0	1
AT5G36700		ATPGLP1, 2-PHOS...	2-phosphoglycolate phosphatase...		Potri.010G180400 [exp]	1.00	0.9943
AT4G03520		ATHM2	Thioredoxin superfamily protei...		Potri.002G073000 [exp]	2.00	0.9860
AT4G03520		ATHM2	Thioredoxin superfamily protei...		Potri.005G186800 [exp]	3.00	0.9861	PtrTrxm9
AT2G22780		PMDH1	peroxisomal NAD-malate dehydro...		Potri.009G081600 [exp]	3.16	0.9865	MDHG.1
AT1G42970		GAPB	glyceraldehyde-3-phosphate deh...		Potri.005G254100 [exp]	4.89	0.9796	Pt-GAPB.2
AT1G44575		CP22, PSBS, NPQ...	PHOTOSYSTEM II SUBUNIT S, NONP...		Potri.002G083500 [exp]	5.00	0.9835	NPQ4.1
AT2G13360		SGAT, AGT1, AGT	L-serine:glyoxylate aminotrans...		Potri.009G047700 [exp]	6.48	0.9813
AT1G32060		PRK	phosphoribulokinase (.1)		Potri.001G134000 [exp]	6.70	0.9792
AT4G03280		PGR1, PETC	PROTON GRADIENT REGULATION 1, ...		Potri.019G118500 [exp]	8.77	0.9808	PETC.1
AT4G31530			NAD(P)-binding Rossmann-fold s...		Potri.001G253900 [exp]	9.79	0.9772

Compare expression of checked genes

Potri.001G394400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.