Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14400 654 / 0 UBP25 ubiquitin-specific protease 25 (.1) AT1G17110 228 / 4e-64 UBP15 ubiquitin-specific protease 15 (.1.2) AT5G57990 219 / 2e-61 UBP23 ubiquitin-specific protease 23 (.1) AT5G65450 216 / 6e-61 UBP17 ubiquitin-specific protease 17 (.1) AT4G24560 213 / 1e-58 UBP16 ubiquitin-specific protease 16 (.1) AT2G24640 204 / 4e-58 UBP19 ubiquitin-specific protease 19 (.1.2) AT4G31670 204 / 3e-57 UBP18 ubiquitin-specific protease 18 (.1) AT5G46740 166 / 3e-43 UBP21 ubiquitin-specific protease 21 (.1) AT4G17895 143 / 8e-36 UBP20 ubiquitin-specific protease 20 (.1) AT4G39910 118 / 8e-29 ATUBP3 ubiquitin-specific protease 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G112800 [exp] 1060 / 0 AT3G14400 690 / 0.0 ubiquitin-specific protease 25 (.1) Potri.005G156900 [exp] 229 / 3e-64 AT4G24560 639 / 0.0 ubiquitin-specific protease 16 (.1) Potri.011G095200 [exp] 224 / 3e-63 AT1G17110 799 / 0.0 ubiquitin-specific protease 15 (.1.2) Potri.002G104800 [exp] 226 / 4e-63 AT4G24560 551 / 7e-179 ubiquitin-specific protease 16 (.1) Potri.018G107500 [exp] 224 / 1e-62 AT5G57990 580 / 0.0 ubiquitin-specific protease 23 (.1) Potri.001G378900 [exp] 221 / 8e-62 AT1G17110 848 / 0.0 ubiquitin-specific protease 15 (.1.2) Potri.006G185200 [exp] 219 / 8e-61 AT5G57990 620 / 0.0 ubiquitin-specific protease 23 (.1) Potri.018G009500 [exp] 214 / 5e-60 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.006G270600 [exp] 207 / 3e-58 AT2G24640 698 / 0.0 ubiquitin-specific protease 19 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005591 [exp] 725 / 0 AT3G14400 639 / 0.0 ubiquitin-specific protease 25 (.1) Lus10013726 [exp] 722 / 0 AT3G14400 641 / 0.0 ubiquitin-specific protease 25 (.1) Lus10009273 [exp] 222 / 1e-61 AT4G24560 585 / 0.0 ubiquitin-specific protease 16 (.1) Lus10020116 [exp] 209 / 7e-59 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Lus10026918 [exp] 207 / 4e-58 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Lus10036607 [exp] 204 / 8e-56 AT5G57990 536 / 5e-178 ubiquitin-specific protease 23 (.1) Lus10035825 [exp] 204 / 1e-55 AT5G57990 537 / 3e-178 ubiquitin-specific protease 23 (.1) Lus10043127 [exp] 176 / 4e-47 AT5G46740 362 / 2e-115 ubiquitin-specific protease 21 (.1) Lus10032623 [exp] 179 / 5e-47 AT5G46740 366 / 1e-110 ubiquitin-specific protease 21 (.1) Lus10043126 [exp] 176 / 1e-46 AT5G46740 367 / 6e-116 ubiquitin-specific protease 21 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [poplar] [flax] Peptidase_CA PF13423 [poplar] [flax] UCH_1 Ubiquitin carboxyl-terminal hydrolase
Representative CDS sequence Show only first row Show all	>Potri.001G394600.1 pacid=42789387 polypeptide=Potri.001G394600.1.p locus=Potri.001G394600 ID=Potri.001G394600.1.v4.1 annot-version=v4.1 ATGGGCGGGTTTCAGCTGCAAAAATTGCAAATGAGTTGGCAACCGAATTTGCTGAGTCAACAACGCAAAAACGGTCCTCTAGGGTTAAAGAATCTCGGCA ACTCCTGTTATCTCAATAGCGTCCTTCAGTGCCTCACTTACACTCCTCCTCTCGCTAATTTCTGCCTACGTCTCCAACACTCCTCTCTCTGTAATTCCCT TGCTAGCGGAGATAGGAAGAGAGACTGTCCGTTTTGTATTCTTGAAAAACAGATAGTCCGTTCACTCAGTTCGGATCTCGCGCACGATGTGCCCTCGAAG ATTCGAAGCTGTTTGAAGATTTTTGCTGAGCATTTTCGCTGTGGACGACAGGAAGATGCGCACGAATTTTTGCGATATGTGATTGATGCGTGCCATAATA CGTGTTTGCGTTTGAAGAAACTGAGTTGGAAAGGGATTGAGAACGGTGGTGATGGGAGTGTGGTTAAGAAGATATTTGGAGGTGCATTGCAAAGTCAAGT GAAGTGCTTGTGTTGCAATTGCGAGTCGAATAAAGTTGATGAGATTATGGATATTAGTTTAGATGTTTTAAATAGTAATTCGGTAAGAGATGCGATGCAA AAGTTTTTTCAGCCTGAGGTTTTGGATGGGAATAACAAGTACAAATGCGAAAATTGTAAGAAACTAGTGGCAGCTAGGAAGCAAATGTCAGTACTTCAAG CGCCCAATGTTCTTGTTATCCAATTGAAGAGATTTGAGGGCATATTCGGTGGGAAGATTGATAAGGCCATTGCATTTGAAGAAGTTTTGGTTCTTTCAAG CTTCATGAGCAAGACAAGCCAGGATCCACAACCCAAGTATAATCTTTTTGGTATCATTGTGCACTCTGGATATTCCTTGGAAGCTGGACACTATTATGCA TACATCAAGGATGCAATCGGTCAGTGGTATTGCTGCAATGATTCATATGTGACACTCTCAACACTGCAGGAGGTCATGTCAGAGAAGGCCTATATTCTTT TCTTTTCCCGCACTAACCAAAGGCCAGTATCTGCTGACTCTGCTTTTACCTCCAATGGAGTAAAATCATGCGAATTGAATGGCAGCGAAGCATCTAAAAG TTCAAAGGCTGCTGTTCCTTTGAAAGCACTGCCTACAAAACCACAGGTTGAAAAATCTTCAAGAAAGGATATTTCAGCCATGTCTAAGATTGATAGAGTG CCTTCTAGCCCACCGGTAAAGTTCAGTTTTGTTGGGAACTCTGGATCCAAAAGTGTTTCTTCATCTGTTAATGGAAAGGTTGATCCTCATAAGTGTCAAA ACAAGGAAATGAATGGGAATGTGAAAGAGACAGTTCATGTGGAGATATGTGACAAAGATGTATCAACAGTGACAAGCAGTAATGGCTTTGAAAAGCATAA AAATGTTGATGCTGTTGAAGGTGAGACCCACCACACATTTGCAGCAGCAAGTGAAAATGGTCATTCTCAAAACGGTGCTTTTAATTCTGTAAAGCCACAT ATCTGTGACAGTAATGATACAACAAGCAAGTTGACACCAGGAAGAGGACATGATCAACTTGAATTGCAAAATGGTGGTATGAAGTATCACGCTGACATTT CAGGTTTGAAGAGAAAGCTAAAGGAGGAATCCTGCATTTTGCTTTCACAGGATGCTCAATCTCTAGCCAAAGTTGAAGAATTCAAAGAAGTCCTCAACCA AGAAGCATCTTCCATTTTGGGATCATGCGGTTTGTCAGATAAGGTATACAATTTCATGCGTGCGAGAAAGAGGTCATGTATTCAAGAAGCAGGAAACAAA CCAAGTGGTACTGATTTAAAGAAGTTGTTGATTGCAGATGCCAAACGAACCTATATTCCACAAATACCTGAGTCATTGAAAGAGGACCTAGTCAAACGCC TCCAGTTATTTAGTCAAGAGAAATGA
AA sequence Show only first row Show all	>Potri.001G394600.1 pacid=42789387 polypeptide=Potri.001G394600.1.p locus=Potri.001G394600 ID=Potri.001G394600.1.v4.1 annot-version=v4.1 MGGFQLQKLQMSWQPNLLSQQRKNGPLGLKNLGNSCYLNSVLQCLTYTPPLANFCLRLQHSSLCNSLASGDRKRDCPFCILEKQIVRSLSSDLAHDVPSK IRSCLKIFAEHFRCGRQEDAHEFLRYVIDACHNTCLRLKKLSWKGIENGGDGSVVKKIFGGALQSQVKCLCCNCESNKVDEIMDISLDVLNSNSVRDAMQ KFFQPEVLDGNNKYKCENCKKLVAARKQMSVLQAPNVLVIQLKRFEGIFGGKIDKAIAFEEVLVLSSFMSKTSQDPQPKYNLFGIIVHSGYSLEAGHYYA YIKDAIGQWYCCNDSYVTLSTLQEVMSEKAYILFFSRTNQRPVSADSAFTSNGVKSCELNGSEASKSSKAAVPLKALPTKPQVEKSSRKDISAMSKIDRV PSSPPVKFSFVGNSGSKSVSSSVNGKVDPHKCQNKEMNGNVKETVHVEICDKDVSTVTSSNGFEKHKNVDAVEGETHHTFAAASENGHSQNGAFNSVKPH ICDSNDTTSKLTPGRGHDQLELQNGGMKYHADISGLKRKLKEESCILLSQDAQSLAKVEEFKEVLNQEASSILGSCGLSDKVYNFMRARKRSCIQEAGNK PSGTDLKKLLIADAKRTYIPQIPESLKEDLVKRLQLFSQEK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14400		UBP25	ubiquitin-specific protease 25...		Potri.001G394600 [exp]	0	1
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Potri.006G102000 [exp]	1.73	0.8072
AT3G62310			RNA helicase family protein (....		Potri.002G192500 [exp]	5.65	0.7782
AT1G26580			unknown protein		Potri.017G091900 [exp]	13.63	0.6675
AT5G44240		ALA2	aminophospholipid ATPase 2 (.1...		Potri.017G013500 [exp]	16.49	0.7452
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Potri.003G110100 [exp]	26.26	0.7448
AT1G04210			Leucine-rich repeat protein ki...		Potri.008G158600 [exp]	27.54	0.7646
AT5G61960		AML1	MEI2-like protein 1 (.1.2)		Potri.001G067300 [exp]	28.00	0.7176
AT2G39580			unknown protein		Potri.008G052500 [exp]	32.40	0.7312
AT4G08180		ORP1C	OSBP(oxysterol binding protein...		Potri.002G088000 [exp]	34.24	0.6737
AT3G16785		PLDZ1, PLDZETA1...	PHOSPHOLIPASE D ZETA1, PHOSPHO...		Potri.008G211100 [exp]	37.22	0.7411	PLDP1.1

Compare expression of checked genes

Potri.001G394600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.