Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14103 90 / 3e-19 F-box/RNI-like superfamily protein (.1.2) AT4G00320 87 / 5e-18 F-box/RNI-like superfamily protein (.1) AT5G41840 87 / 7e-18 F-box/RNI-like superfamily protein (.1) AT3G28410 86 / 1e-17 F-box/RNI-like superfamily protein (.1) AT5G02700 84 / 6e-17 F-box/RNI-like superfamily protein (.1) AT3G58860 82 / 2e-16 F-box/RNI-like superfamily protein (.1) AT3G59200 82 / 3e-16 F-box/RNI-like superfamily protein (.1) AT5G02920 78 / 5e-16 F-box/RNI-like superfamily protein (.1) AT5G03100 79 / 8e-16 F-box/RNI-like superfamily protein (.1) AT3G59240 78 / 3e-15 RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G099400 [exp] 171 / 2e-46 AT5G44950 77 / 1e-14 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.013G146800 [exp] 140 / 1e-35 AT1G69630 71 / 5e-13 F-box/RNI-like superfamily protein (.1) Potri.017G146400 [exp] 139 / 3e-35 AT3G28410 79 / 2e-15 F-box/RNI-like superfamily protein (.1) Potri.017G146300 [exp] 138 / 3e-35 AT5G02700 71 / 8e-13 F-box/RNI-like superfamily protein (.1) Potri.017G146500 [exp] 98 / 8e-22 AT5G02920 64 / 2e-11 F-box/RNI-like superfamily protein (.1) Potri.013G151700 [exp] 85 / 2e-17 AT4G14096 87 / 2e-18 F-box/RNI-like superfamily protein (.1) Potri.014G039700 [exp] 72 / 2e-13 AT1G13570 265 / 7e-85 F-box/RNI-like superfamily protein (.1) Potri.011G042900 [exp] 71 / 5e-13 AT1G61330 226 / 2e-68 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.002G132400 [exp] 70 / 2e-12 AT1G13570 251 / 3e-79 F-box/RNI-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006866 [exp] 174 / 9e-47 AT1G73040 194 / 5e-58 Mannose-binding lectin superfamily protein (.1) Lus10037604 [exp] 77 / 3e-16 AT5G53635 54 / 6e-09 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10037440 [exp] 67 / 3e-11 AT1G69630 84 / 5e-17 F-box/RNI-like superfamily protein (.1) Lus10039271 [exp] 65 / 5e-11 AT5G56820 88 / 5e-19 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10028664 [exp] 65 / 1e-10 AT5G50260 59 / 6e-09 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Lus10034415 [exp] 61 / 5e-10 AT1G13570 358 / 1e-123 F-box/RNI-like superfamily protein (.1) Lus10042272 [exp] 61 / 7e-10 AT4G03220 65 / 4e-11 Protein with RNI-like/FBD-like domains (.1) Lus10034414 [exp] 60 / 2e-09 AT1G13570 475 / 5e-167 F-box/RNI-like superfamily protein (.1) Lus10034733 [exp] 60 / 3e-09 AT1G61320 110 / 5e-26 FBD / Leucine Rich Repeat domains containing protein (.1) Lus10029952 [exp] 59 / 3e-09 AT5G03100 68 / 1e-12 F-box/RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Potri.001G395000.2 pacid=42792855 polypeptide=Potri.001G395000.2.p locus=Potri.001G395000 ID=Potri.001G395000.2.v4.1 annot-version=v4.1 ATGGATCATATTTCGCGTTTTCCTGATGGTGTTCTTCATCATATTCTGTCTTTCCTCCCCACTAAAGATGTACTTCGAACTAGTATCCTATCCAAAAGGT GGAAACTTGTGCTTGACACTTATCCCATTTTAGATTTCAGTTGGGGTGACTGCGCAGGACAAAGTAGTGATGCTATGTATAGTGAGAATGCTTCTGATGA ATATCGCCAAATGCTAACAAAATTCATGAATTATGTGGATACGTCAATTTTCAGATTCTGCAAGTACAAGTTTAGCATGCAGAAGTTTAAACTTTTTCTT GTCCTCCCTGATCTGGAGTTGTCTTCTCATTTGGACAAATGGGTACAGAAGGTTATTGAAAATGGTGCGAAAGAGGTTGATTTTGGCATTGATTTACCTG GTTATTTACACTTTAAAAAACCCTACAGTATGCCTGATGCTATTTTTGCTGCTAAATCAGTCACTGTTTTGAAATTATTCGGTTGTAATGTGAAGCTCGA GGAGTCCTTCTGCATAAAGTTGCATTCTCTTCAGAAGCTTGCACTCAAGGAAGTCCAAATGGATGATCATTTGCTTAGAAGAATTGTCACATGCTGTCCA TTAATTGAGGATATATCTCTAAGATTTTGTTGGGGTTTAAAAAAAATTCAGGTTTTCGAGCTTCTCAGGCTCAAGAAGTTTGAAATTTACTCTCACTTAT CTAAGCCTGAGAGTGTTGAGATCAAATCACCAAGTCTTGAAAGTTTCCATTGCTCGTTTACTGTAAGATCAGTGAAACCTATTGTTAGCGTGGATGCTTG TCAAGGACTCAAAAGTTTAATCCTATCTGGTTCTTTTGTCACAGAACTTCTATTACAAGATTTGGTTCCAAAGTTTCATGTCTTGGAGAGTTTGAGAGTT GGTGACTGTCCGGTATTGAAAAAGGTGAAAATTTCAAGTTGGAGGCTTAAGAGTTTGGAAATTCATTCTTGCGAGAATATAATGGATATTGAGATCAATA CTCCAAATTTACTTTCATGCAAGTACTGTGGTTCTGTTGTACCGGTTTCATTGATAAATGCTCCATCTTGTCATTGGCAAGTTGAATTTAGCCTGATGAA CACCCTTGACATTCTTTGGTATATGACACTGAAAGAATTTCTTGCGAAGTTGAATCAGCTTGTATATCTACACGTATATGTATATCTAACAACAATCATG AGTTCACTTAATTTGGAAGACTTGAGCAACAATGCCTCTCCATATGTGGTCGACAATGTGGTCCTAACAGTACATTCTGCATCTCCGATAATGACTTATG CTAATTTTATGGATGGTTTGTTCTTCTTTTCTCGTCCCAAAAACTTGTTTATAAGATCCACTGATGAGCAAAAGAGATATGTAGAGTATCTTTGTGGGTT TTCGAAAAGAGCTCTATCATGCTGCAACCATAGGAAAGTAAAATGTTGGCGACATGACCTAAAAGAAGTGAAGCTCGGGAGCTTTGTAGAGAGTGCAGAT GGGATGGTCGATTACAACAGAATGACCTCGAGTTTCTTTTGGCTTGTAAAAGGCCACACTCATTGTAAAATGGAATGGGAATTGTAG
AA sequence Show only first row Show all	>Potri.001G395000.2 pacid=42792855 polypeptide=Potri.001G395000.2.p locus=Potri.001G395000 ID=Potri.001G395000.2.v4.1 annot-version=v4.1 MDHISRFPDGVLHHILSFLPTKDVLRTSILSKRWKLVLDTYPILDFSWGDCAGQSSDAMYSENASDEYRQMLTKFMNYVDTSIFRFCKYKFSMQKFKLFL VLPDLELSSHLDKWVQKVIENGAKEVDFGIDLPGYLHFKKPYSMPDAIFAAKSVTVLKLFGCNVKLEESFCIKLHSLQKLALKEVQMDDHLLRRIVTCCP LIEDISLRFCWGLKKIQVFELLRLKKFEIYSHLSKPESVEIKSPSLESFHCSFTVRSVKPIVSVDACQGLKSLILSGSFVTELLLQDLVPKFHVLESLRV GDCPVLKKVKISSWRLKSLEIHSCENIMDIEINTPNLLSCKYCGSVVPVSLINAPSCHWQVEFSLMNTLDILWYMTLKEFLAKLNQLVYLHVYVYLTTIM SSLNLEDLSNNASPYVVDNVVLTVHSASPIMTYANFMDGLFFFSRPKNLFIRSTDEQKRYVEYLCGFSKRALSCCNHRKVKCWRHDLKEVKLGSFVESAD GMVDYNRMTSSFFWLVKGHTHCKMEWEL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G14103			F-box/RNI-like superfamily pro...		Potri.001G395000 [exp]	0	1
AT1G33060	NAC	ANAC014	NAC 014 (.1.2)		Potri.001G452700 [exp]	1.73	0.8328
AT4G30520		SARK	SENESCENCE-ASSOCIATED RECEPTOR...		Potri.018G101300 [exp]	2.23	0.8636
AT5G53540			P-loop containing nucleoside t...		Potri.012G015670 [exp]	2.82	0.8463
AT1G61065			Protein of unknown function (D...		Potri.004G038700 [exp]	5.19	0.8020
AT5G53540			P-loop containing nucleoside t...		Potri.012G013580 [exp]	6.00	0.8289
AT1G04520		PDLP2	plasmodesmata-located protein ...		Potri.002G257300 [exp]	7.41	0.8163
AT3G23510			Cyclopropane-fatty-acyl-phosph...		Potri.010G067800 [exp]	7.93	0.8079
AT5G46460			Pentatricopeptide repeat (PPR)...		Potri.001G267100 [exp]	8.36	0.7987
AT3G06810		IBR3	IBA-RESPONSE 3, acyl-CoA dehyd...		Potri.010G010448 [exp]	8.48	0.8070
AT4G31970		CYP82C2, JAH1	"cytochrome P450, family 82, s...		Potri.014G037900 [exp]	11.22	0.8124	Pt-CYP82.16

Compare expression of checked genes

Potri.001G395000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.