Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53980 115 / 4e-33 HD ATHB52 homeobox protein 52 (.1) AT3G01470 91 / 1e-22 HD HD-ZIP-1, HAT5, ATHB1, ATHB-1 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) AT5G15150 91 / 5e-22 HD ATHB3, HAT7, ATHB-3 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1) AT3G01220 89 / 2e-21 HD ATHB20 homeobox protein 20 (.1) AT1G69780 88 / 3e-21 HD ATHB13 Homeobox-leucine zipper protein family (.1) AT2G46680 86 / 7e-21 HD ATHB7, ATHB-7 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2) AT5G65310 86 / 1e-20 HD ATHB-5, ATHB5 homeobox protein 5 (.1.2) AT4G40060 85 / 3e-20 HD ATHB16 ,ATHB-16 homeobox protein 16 (.1) AT3G61890 84 / 3e-20 HD ATHB12, ATHB-12 ARABIDOPSIS THALIANA HOMEOBOX 12, homeobox 12 (.1) AT2G22430 84 / 8e-20 HD ATHB6 homeobox protein 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G114500 [exp] 221 / 9e-75 AT5G53980 113 / 2e-32 homeobox protein 52 (.1) Potri.017G016900 [exp] 100 / 8e-27 AT5G53980 80 / 3e-19 homeobox protein 52 (.1) Potri.012G070900 [exp] 96 / 4e-24 AT3G01470 145 / 1e-41 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.015G065400 [exp] 95 / 8e-24 AT3G01470 136 / 4e-38 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.007G135100 [exp] 91 / 2e-23 AT5G53980 85 / 3e-21 homeobox protein 52 (.1) Potri.007G097100 [exp] 89 / 2e-21 AT2G22430 250 / 9e-82 homeobox protein 6 (.1) Potri.005G071900 [exp] 89 / 3e-21 AT2G22430 248 / 6e-81 homeobox protein 6 (.1) Potri.008G148200 [exp] 88 / 3e-21 AT1G69780 333 / 6e-115 Homeobox-leucine zipper protein family (.1) Potri.017G081700 [exp] 87 / 7e-21 AT5G15150 248 / 5e-81 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003492 [exp] 121 / 1e-34 AT5G53980 110 / 9e-31 homeobox protein 52 (.1) Lus10013103 [exp] 111 / 2e-30 AT5G53980 107 / 3e-29 homeobox protein 52 (.1) Lus10042180 [exp] 94 / 3e-23 AT3G01470 159 / 6e-47 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10033102 [exp] 88 / 3e-21 AT3G01470 151 / 4e-44 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10036674 [exp] 88 / 3e-21 AT3G01470 153 / 8e-45 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10037218 [exp] 88 / 3e-21 AT3G01470 140 / 7e-40 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10012845 [exp] 87 / 4e-21 AT1G69780 280 / 1e-94 Homeobox-leucine zipper protein family (.1) Lus10036709 [exp] 87 / 5e-21 AT3G01470 139 / 2e-39 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10030493 [exp] 87 / 5e-21 AT1G69780 288 / 1e-97 Homeobox-leucine zipper protein family (.1) Lus10022225 [exp] 87 / 5e-21 AT3G01470 270 / 2e-90 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00046 [poplar] [flax] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Potri.001G395100.2 pacid=42789205 polypeptide=Potri.001G395100.2.p locus=Potri.001G395100 ID=Potri.001G395100.2.v4.1 annot-version=v4.1 ATGGACTTCTTCAATTCTCAAACCCAACAAAAACAACAGTACTTGCCAAAACACAACAACAAGAAGAGGCTGACAGAGGACCAAGTGAGGCTCCTAGAGA GAACCTTCACAACCAACAAGAAGCTCGAGCCTGAGCTCAAGGTTCAACTTGCAAACCAGCTAGGGGTGCCGCCAAGACAAATTGCTATTTGGTACCAGAA CAAGAGAGCAAGATGGAAGACACAGAGCCTAGAGCTTGATTATAATACACTCCAAGTGAGACTAGAGAATGCACTAGCCGATAGGCGGCGACTAGAAAGA GAGGTGGTGCGACTTCAAGAGGAGCTGTGGCAGGCTCAACAGATGGTGTTCGCTGTGAACCAAGAAACAGCAGCTCAACCTGCTGTTAATTTTTCTTGTA ACTCATCTTGTGATGATAGAGGCAGCTCTAGCTTACATGAGGGAGTGAATGGTGAGGTCTTGCAGCTTGAAGAGCTCTATGCTTGTTTGTACGGTGCTGG CGGTGGGTTTTGA
AA sequence Show only first row Show all	>Potri.001G395100.2 pacid=42789205 polypeptide=Potri.001G395100.2.p locus=Potri.001G395100 ID=Potri.001G395100.2.v4.1 annot-version=v4.1 MDFFNSQTQQKQQYLPKHNNKKRLTEDQVRLLERTFTTNKKLEPELKVQLANQLGVPPRQIAIWYQNKRARWKTQSLELDYNTLQVRLENALADRRRLER EVVRLQEELWQAQQMVFAVNQETAAQPAVNFSCNSSCDDRGSSSLHEGVNGEVLQLEELYACLYGAGGGF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53980	HD	ATHB52	homeobox protein 52 (.1)		Potri.001G395100 [exp]	0	1
AT3G14460			LRR and NB-ARC domains-contain...		Potri.017G121901 [exp]	3.16	0.8533
AT2G40390			unknown protein		Potri.010G183100 [exp]	7.48	0.8006
AT3G08570			Phototropic-responsive NPH3 fa...		Potri.016G139900 [exp]	10.09	0.8074
AT2G39370		MAKR4	MEMBRANE-ASSOCIATED KINASE REG...		Potri.006G214700 [exp]	12.64	0.8164
AT4G37180	GARP		Homeodomain-like superfamily p...		Potri.005G134600 [exp]	13.41	0.7682
AT3G47800			Galactose mutarotase-like supe...		Potri.012G128800 [exp]	15.06	0.6529
AT4G27590			Heavy metal transport/detoxifi...		Potri.012G007200 [exp]	16.00	0.7999
AT5G64250			Aldolase-type TIM barrel famil...		Potri.017G051800 [exp]	16.73	0.7437
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.001G003100 [exp]	19.89	0.8305
AT4G12390		PME1	pectin methylesterase inhibito...		Potri.003G113700 [exp]	26.72	0.7546

Compare expression of checked genes

Potri.001G395100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.