Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39080 85 / 6e-19 HXXXD-type acyl-transferase family protein (.1) AT5G39090 80 / 3e-17 HXXXD-type acyl-transferase family protein (.1) AT3G29680 80 / 3e-17 HXXXD-type acyl-transferase family protein (.1) AT3G29635 79 / 5e-17 HXXXD-type acyl-transferase family protein (.1) AT3G29670 76 / 1e-15 PMAT2 phenolic glucoside malonyltransferase 2, HXXXD-type acyl-transferase family protein (.1) AT5G61160 72 / 1e-14 AACT1 anthocyanin 5-aromatic acyltransferase 1 (.1) AT5G39050 72 / 2e-14 PMAT1 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) AT1G03940 64 / 9e-12 HXXXD-type acyl-transferase family protein (.1) AT1G03495 62 / 3e-11 HXXXD-type acyl-transferase family protein (.1) AT3G29590 60 / 2e-10 AT5MAT HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G395900 [exp] 285 / 7e-95 AT5G39050 299 / 1e-96 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.001G395700 [exp] 279 / 2e-92 AT5G39050 288 / 4e-92 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.001G395400 [exp] 277 / 3e-91 AT5G39050 287 / 2e-91 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G103100 [exp] 150 / 8e-43 AT5G39050 366 / 1e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G103200 [exp] 148 / 4e-42 AT5G39050 374 / 1e-125 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G103300 [exp] 143 / 4e-40 AT5G39050 352 / 3e-117 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110700 [exp] 139 / 1e-38 AT5G39050 369 / 1e-123 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.010G208100 [exp] 138 / 3e-38 AT5G39050 332 / 3e-109 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G109800 [exp] 138 / 3e-38 AT5G39050 368 / 2e-123 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033599 [exp] 106 / 2e-26 AT3G29635 307 / 1e-99 HXXXD-type acyl-transferase family protein (.1) Lus10029276 [exp] 90 / 1e-20 AT5G39050 314 / 1e-102 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Lus10020514 [exp] 85 / 9e-19 AT3G29590 296 / 9e-96 HXXXD-type acyl-transferase family protein (.1) Lus10029798 [exp] 77 / 2e-17 AT3G29680 86 / 4e-20 HXXXD-type acyl-transferase family protein (.1) Lus10041658 [exp] 80 / 4e-17 AT3G29590 298 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10003344 [exp] 74 / 2e-16 AT3G29635 86 / 2e-20 HXXXD-type acyl-transferase family protein (.1) Lus10021390 [exp] 77 / 4e-16 AT3G29590 283 / 7e-91 HXXXD-type acyl-transferase family protein (.1) Lus10035802 [exp] 77 / 5e-16 AT5G39050 276 / 2e-87 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Lus10005362 [exp] 76 / 1e-15 AT3G29635 292 / 4e-94 HXXXD-type acyl-transferase family protein (.1) Lus10021388 [exp] 75 / 2e-15 AT3G29635 278 / 3e-88 HXXXD-type acyl-transferase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G395300.2 pacid=42791035 polypeptide=Potri.001G395300.2.p locus=Potri.001G395300 ID=Potri.001G395300.2.v4.1 annot-version=v4.1 ATGGATGACTGGAGAGAAGTACCAATCAGTCAAAACGAGAAGAAGAACATCATGATAAGGAGCAGGCTCAGCTATTTTCCTTCTGTTTTTTTCCTGGCAC AGAAATGGCTCATTTCGATCAATCTGAAAACTATTGGTTGCCGAGTTCTATTAAAGGAGCAAGAGCTGAAACGAAAAAAACATATCCCACCCTCAATCTC TCTCTCTCTCTCTCTAGCTATCTCTATGGCATCACCGAACTCTGTAAAGATACTTGATATCTGCGAAGTGGCTGCCGCTTATGACTCTACCAAGTCAGCC ACCGAAACAATACTCTCTCCTACTTTTTTTGAACTGTCAGGTCTCAGATTTCCTCCATCTGACTGCCTCTGCTTCTTCAAACTTACTGATTCAAACCCTA CCTTCTTTCACTCTGTAATTTTCCCCAGTCTCAAACAATCACTTTCCCATGCACTCCTCCACTTCCTCCCTATCGTCGGCAGCCTAACATGGCCCCCTGA ATCCTCCAGACCCATCTTTGTTTACCATCCTAAAAACGATTCCGTTTCAGTTACCCTTGCCGAGTGTAATGGTGATTTCGATCGCCTTATAGGCAATAAT GGAATCCATGAAGCTGTTGAATCGCATCCTTATGCTCCCCAATTCGTGGCAACTGAAACTAGGTCACCATGA
AA sequence Show only first row Show all	>Potri.001G395300.2 pacid=42791035 polypeptide=Potri.001G395300.2.p locus=Potri.001G395300 ID=Potri.001G395300.2.v4.1 annot-version=v4.1 MDDWREVPISQNEKKNIMIRSRLSYFPSVFFLAQKWLISINLKTIGCRVLLKEQELKRKKHIPPSISLSLSLAISMASPNSVKILDICEVAAAYDSTKSA TETILSPTFFELSGLRFPPSDCLCFFKLTDSNPTFFHSVIFPSLKQSLSHALLHFLPIVGSLTWPPESSRPIFVYHPKNDSVSVTLAECNGDFDRLIGNN GIHEAVESHPYAPQFVATETRSP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G39080			HXXXD-type acyl-transferase fa...		Potri.001G395300 [exp]	0	1
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Potri.001G395400 [exp]	1.73	0.8111
AT1G09850		XBCP3	xylem bark cysteine peptidase ...		Potri.011G066800 [exp]	12.72	0.7701
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Potri.001G395700 [exp]	18.11	0.7620
AT5G01500		TAAC	thylakoid ATP/ADP carrier (.1)		Potri.016G115400 [exp]	21.44	0.7232
AT2G45480	GRF	ATGRF9	growth-regulating factor 9 (.1...		Potri.014G071800 [exp]	22.36	0.6986
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Potri.007G112600 [exp]	28.28	0.7343
AT5G16340			AMP-dependent synthetase and l...		Potri.004G000300 [exp]	28.77	0.7630
AT5G44005			unknown protein		Potri.014G192100 [exp]	30.00	0.7243
AT1G16060	AP2_ERF	ADAP	ARIA-interacting double AP2 do...		Potri.001G041500 [exp]	33.34	0.7522
AT5G10600		CYP81K2	"cytochrome P450, family 81, s...		Potri.017G028200 [exp]	35.77	0.7562	CYP81R2v2,IFS1.55

Compare expression of checked genes

Potri.001G395300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.