Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39050 288 / 1e-91 PMAT1 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) AT5G39080 286 / 4e-91 HXXXD-type acyl-transferase family protein (.1) AT3G29635 282 / 1e-89 HXXXD-type acyl-transferase family protein (.1) AT5G39090 275 / 5e-87 HXXXD-type acyl-transferase family protein (.1) AT3G29590 275 / 9e-87 AT5MAT HXXXD-type acyl-transferase family protein (.1) AT3G29670 272 / 6e-86 PMAT2 phenolic glucoside malonyltransferase 2, HXXXD-type acyl-transferase family protein (.1) AT5G61160 263 / 4e-82 AACT1 anthocyanin 5-aromatic acyltransferase 1 (.1) AT3G29680 238 / 1e-72 HXXXD-type acyl-transferase family protein (.1) AT1G03940 165 / 3e-45 HXXXD-type acyl-transferase family protein (.1) AT1G03495 165 / 3e-45 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G395700 [exp] 933 / 0 AT5G39050 288 / 4e-92 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.001G395900 [exp] 924 / 0 AT5G39050 299 / 1e-96 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.017G094700 [exp] 505 / 1e-176 AT5G39080 315 / 8e-103 HXXXD-type acyl-transferase family protein (.1) Potri.004G109800 [exp] 437 / 7e-150 AT5G39050 368 / 2e-123 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110700 [exp] 429 / 2e-146 AT5G39050 369 / 1e-123 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110640 [exp] 427 / 6e-146 AT5G39050 365 / 2e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G109300 [exp] 424 / 1e-144 AT5G39050 365 / 3e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110400 [exp] 422 / 9e-144 AT5G39050 363 / 2e-121 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.010G208100 [exp] 422 / 9e-144 AT5G39050 332 / 3e-109 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029276 [exp] 338 / 5e-111 AT5G39050 314 / 1e-102 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Lus10033599 [exp] 322 / 1e-104 AT3G29635 307 / 1e-99 HXXXD-type acyl-transferase family protein (.1) Lus10020721 [exp] 296 / 1e-94 AT5G39050 280 / 2e-89 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Lus10041658 [exp] 264 / 2e-82 AT3G29590 298 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10005362 [exp] 263 / 4e-82 AT3G29635 292 / 4e-94 HXXXD-type acyl-transferase family protein (.1) Lus10020514 [exp] 262 / 1e-81 AT3G29590 296 / 9e-96 HXXXD-type acyl-transferase family protein (.1) Lus10035802 [exp] 262 / 6e-81 AT5G39050 276 / 2e-87 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Lus10021390 [exp] 255 / 5e-79 AT3G29590 283 / 7e-91 HXXXD-type acyl-transferase family protein (.1) Lus10041655 [exp] 255 / 6e-79 AT3G29590 277 / 3e-88 HXXXD-type acyl-transferase family protein (.1) Lus10021388 [exp] 247 / 1e-75 AT3G29635 278 / 3e-88 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [poplar] [flax] CoA-acyltrans PF02458 [poplar] [flax] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Potri.001G395400.1 pacid=42789409 polypeptide=Potri.001G395400.1.p locus=Potri.001G395400 ID=Potri.001G395400.1.v4.1 annot-version=v4.1 ATGGCTCATTTCGATCAATCTGAAAACTATTGGTTGCCGAGTTCTATTAAAGGAGCAAGAGCTGAAACGAAAAAAACATATCCCACTCTCAATCTCTCTC TCTTTTTCACTCTAGCTATCTCTATGGCATCACCGAACTCTGTAAAGATACTTGATATCTGCGAAGTGGCTGCCGCTTATGACTCTACCAAGTCAGCCAC CGAAACAATACTCTCTCCTACTTTTTTTGAACTGTCAGGTCTCAGATTTCCTCCAACTGAGTGCCTCTTCTTCTTCAAACTTACTGATTCAAACCCTACC TTCTTTCACTCTGTAATTTTCCCCAGTCTCAAAAAATCACTTTCCAATGCACTCCTCCACTTCCTCCCTATCGTCGGCAGCCTAACATGGCCCCCTGAAT CCTCCAGACCCATCTTTGTTTACCATCCTAATAACGATTCCGTTAAAGTTACACTTGCCGAGTGTAATGGTGATTTCGATCGCCTTATAGGCAATGGAAT CCATGAAGCTGTTGAATCACATCCTTATGCTCCCCAATTCGTCGCAACTGAAACTAGGTCACCATTAGTGGTTTTACAAGTAACATTATTTCCTAACAAA GGCTTTTGCATTGGTATGGCAACGCACCATGCAATATTTGACGGGAAAAGCGTATCTATGTTCCTCAGAGCTTGGGCTTATACATGCAAATATATTGTCG AAAAAGGTGAAGCCCCACGTATATTGCCAGCAGAAATCACCCCGAGTTTTGAATGGAAAAGTATCCAAGACTCCAAAGGTTTGGAGGAGGCGTACATTAA CTTGTGGGCAACCATGGGGAAACGGTTAGAATCAGGTTCAGACTCGAACCCAAAAAGTGTGAAGCCGTTGACGAAACTTGAAGTGCAACCTAACTTGCTT CGAGCAACCTTTCATTTATCTAGTGAAGCCATTAAGAAGCTTAGAGAAAGTGTGTTGCGTTATCACCCGGAAGCAACAGACCCTACAAAACGACTTCATC TCTCCACTTATCTTCTGGCATGCTCTTATGTATTGATCTGTCTTGTCAAAGCAAGAGGAGGAGATGCCGACAGAGAGGTTTATTTTGCGTGGTCAGTGGA TTGTAGAAGTCGTTTAGACCCTCCTCTTCCACCAAATCATTTTGGTGACACTGTTGTGGCTCGTCACATAGTTTCTAAAGCCGGAGATTTTTTGCAGGAA AATGGATTAGCTATTATAGCCGAGAAGCTTAGCGCTTCCATAAACGGATTGGACAAGGGACTCCTTGAAGGTTCAAGTGAGAGGTTTGAGATGTTGTTAG GTTTGGGAGCAGAAGTGCGACTAATTAGTGCTGCTGGAGCGACCGGATTAAAATTTTACAACACGGATTTTGGATGGGGAAATGTCGAGAAGGTGGAGCT CACATCCATAGATAGAACTGGAGCGTTTTCAGTGTTGGATATTGGAAATGGAAGTGACCGAAGGATTGAAATTGGCGTGGCTTTGAAGAGGCCTGAAATG GAATCTTTTGCTTCTTTTTTCTCTAATGGCGTAGAAGTTATGTCTAGGCTATAA
AA sequence Show only first row Show all	>Potri.001G395400.1 pacid=42789409 polypeptide=Potri.001G395400.1.p locus=Potri.001G395400 ID=Potri.001G395400.1.v4.1 annot-version=v4.1 MAHFDQSENYWLPSSIKGARAETKKTYPTLNLSLFFTLAISMASPNSVKILDICEVAAAYDSTKSATETILSPTFFELSGLRFPPTECLFFFKLTDSNPT FFHSVIFPSLKKSLSNALLHFLPIVGSLTWPPESSRPIFVYHPNNDSVKVTLAECNGDFDRLIGNGIHEAVESHPYAPQFVATETRSPLVVLQVTLFPNK GFCIGMATHHAIFDGKSVSMFLRAWAYTCKYIVEKGEAPRILPAEITPSFEWKSIQDSKGLEEAYINLWATMGKRLESGSDSNPKSVKPLTKLEVQPNLL RATFHLSSEAIKKLRESVLRYHPEATDPTKRLHLSTYLLACSYVLICLVKARGGDADREVYFAWSVDCRSRLDPPLPPNHFGDTVVARHIVSKAGDFLQE NGLAIIAEKLSASINGLDKGLLEGSSERFEMLLGLGAEVRLISAAGATGLKFYNTDFGWGNVEKVELTSIDRTGAFSVLDIGNGSDRRIEIGVALKRPEM ESFASFFSNGVEVMSRL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Potri.001G395400 [exp]	0	1
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Potri.001G395700 [exp]	1.00	0.9206
AT5G39080			HXXXD-type acyl-transferase fa...		Potri.001G395300 [exp]	1.73	0.8111
AT4G25835			P-loop containing nucleoside t...		Potri.001G231200 [exp]	5.09	0.8779
AT5G62620			Galactosyltransferase family p...		Potri.010G040400 [exp]	6.63	0.7701
					Potri.009G010450 [exp]	6.92	0.7993
AT3G57520		RS2, ATSIP2	raffinose synthase 2, seed imb...		Potri.016G054700 [exp]	7.34	0.8027
AT1G76410		ATL8	RING/U-box superfamily protein...		Potri.005G255200 [exp]	8.36	0.8020
AT1G34300			lectin protein kinase family p...		Potri.019G086300 [exp]	8.36	0.8040
AT3G63300		FKD1	FORKED 1 (.1.2)		Potri.005G213800 [exp]	14.83	0.8059
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Potri.009G020400 [exp]	18.16	0.7243

Compare expression of checked genes

Potri.001G395400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.