Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39050 299 / 1e-96 PMAT1 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) AT5G39080 295 / 6e-95 HXXXD-type acyl-transferase family protein (.1) AT3G29635 286 / 8e-92 HXXXD-type acyl-transferase family protein (.1) AT3G29590 279 / 5e-89 AT5MAT HXXXD-type acyl-transferase family protein (.1) AT5G39090 279 / 6e-89 HXXXD-type acyl-transferase family protein (.1) AT3G29670 273 / 1e-86 PMAT2 phenolic glucoside malonyltransferase 2, HXXXD-type acyl-transferase family protein (.1) AT5G61160 258 / 5e-81 AACT1 anthocyanin 5-aromatic acyltransferase 1 (.1) AT3G29680 242 / 1e-74 HXXXD-type acyl-transferase family protein (.1) AT1G03940 160 / 8e-44 HXXXD-type acyl-transferase family protein (.1) AT1G03495 160 / 1e-43 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G395700 [exp] 934 / 0 AT5G39050 288 / 4e-92 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.001G395400 [exp] 924 / 0 AT5G39050 287 / 2e-91 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.017G094700 [exp] 501 / 2e-175 AT5G39080 315 / 8e-103 HXXXD-type acyl-transferase family protein (.1) Potri.004G109800 [exp] 449 / 3e-155 AT5G39050 368 / 2e-123 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110700 [exp] 438 / 8e-151 AT5G39050 369 / 1e-123 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110640 [exp] 434 / 3e-149 AT5G39050 365 / 2e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G109300 [exp] 434 / 3e-149 AT5G39050 365 / 3e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110400 [exp] 432 / 3e-148 AT5G39050 363 / 2e-121 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.010G208100 [exp] 430 / 2e-147 AT5G39050 332 / 3e-109 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029276 [exp] 339 / 4e-112 AT5G39050 314 / 1e-102 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Lus10033599 [exp] 320 / 2e-104 AT3G29635 307 / 1e-99 HXXXD-type acyl-transferase family protein (.1) Lus10020721 [exp] 292 / 2e-93 AT5G39050 280 / 2e-89 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Lus10005362 [exp] 269 / 7e-85 AT3G29635 292 / 4e-94 HXXXD-type acyl-transferase family protein (.1) Lus10020514 [exp] 269 / 1e-84 AT3G29590 296 / 9e-96 HXXXD-type acyl-transferase family protein (.1) Lus10035802 [exp] 263 / 5e-82 AT5G39050 276 / 2e-87 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Lus10041658 [exp] 259 / 3e-81 AT3G29590 298 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10021389 [exp] 255 / 2e-79 AT3G29590 295 / 4e-95 HXXXD-type acyl-transferase family protein (.1) Lus10021390 [exp] 254 / 5e-79 AT3G29590 283 / 7e-91 HXXXD-type acyl-transferase family protein (.1) Lus10021388 [exp] 250 / 3e-77 AT3G29635 278 / 3e-88 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [poplar] [flax] CoA-acyltrans PF02458 [poplar] [flax] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Potri.001G395900.1 pacid=42792476 polypeptide=Potri.001G395900.1.p locus=Potri.001G395900 ID=Potri.001G395900.1.v4.1 annot-version=v4.1 ATGGCATCACCGAACTCTGTAAAGATACTTGATATCTGCGAAGTGGCTGCCGCTTATGACTCTACCAAGTCAGCCACCGAAACAATACTCTCTCCTACTT TTTTTGAACTGTCAGGTCTCAGATTTCCTCCATCTGACTGCCTCTGCTTCTTCAAACTTACTGATTCAAACCCTACCTTCTTTCACTCTGTAATTTTCCC CAGTCTCAAACAATCACTTTCCCATGCACTCCTCCACTTCCTCCCTATCGTCGGCAGCCTAACATGGCCCCCTGAATCCTCCAGACCCATCTTTGTTTAC CATCCTAAAAACGATTCCGTTTCAGTTACCCTTGCCGAGTGTAATGGTGATTTCGATCGCCTTATAGGCAATGGAATCCATGAAGCTGTTGAATCGCATC CTCATGCTCCCCAATTGGTCGCAACTGACACTAGGTCGCCATTATTGGCTTTACAAGTAACATTATTTCCTAACAAAGGCTTTTGCATTGGTATGGAAAC GCACCATGCAATATTTGACGGGAAAAGCGCATCTATGTTCCTCAGAGCCTGGGCTTATACATGCAAATATATTGTCGAAAAAGGTGAAGCCCCACGTTTA TTGCCAGAAGAAATCACCCCCAGTTTTGAATGGAAAAGTATCCAAGACTCAAAAGGGTTGGAGGAGAAGTACATTAACTTGTGGGCGACCATAGGGAAAC GGTTAGAATCAGGTTCAGACTCGAACCCAAAAAGTGTGAAGCCGTTGACGAAACTTGAAGTGCAACCTAACTTGCTTCGAGCAAACTTTCATTTATCTAG TGAAGCCATTAAGAAGCTTAGAGAAAGTGTGTTGCGTTATCACCCGGAAGCAACAGACCCTACAAAACGACTTCATCTCTCCACTTATGTTCTGGCATGC TCTTATGTATTGATCTGTCTTGTCAAAGCAAGAGGAGGAGATGCCGACAGAGAGGTTTATTTTGCGTGGTCAGTGGATTGTAGAAGTCGTTTAGACCCTC CTCTTCCACCAAATCATTTTGGTGACACTGTTGTGGCTCGTCACATAGTTTCTAAAGCCGGAGATTTTATGCAGGAAAATGGATTAGCTATTATAGCCGA GAAGCTTAGCGCTTCCATAAACGGATTGGACAAGGGACTCCTTGAAGGTTCAAGTGAGAGGTTAGAGATGTTGTTAAGTTTGGGACCAGAAGTGCGACTA ATTAGTGTTGCTGGAGCGACCGGATTAAAATTTTACAACACGGATTTTGGATGGGGAAATGTCGAGAAGGTGGAGCTCACATCCATAGATAGAACTGGAG CGTTTTCAGTGTTGGATATTGGAAATGGAAATGACCGAAGGACTGAAATTGGCGTGGCTTTGAAGAGGCCTGAAATGGAATCTTTTGCTTCTTTTTTCTG TAATGGCGTAGAAGTTATGCCATTCAAGCAAATTCAATGA
AA sequence Show only first row Show all	>Potri.001G395900.1 pacid=42792476 polypeptide=Potri.001G395900.1.p locus=Potri.001G395900 ID=Potri.001G395900.1.v4.1 annot-version=v4.1 MASPNSVKILDICEVAAAYDSTKSATETILSPTFFELSGLRFPPSDCLCFFKLTDSNPTFFHSVIFPSLKQSLSHALLHFLPIVGSLTWPPESSRPIFVY HPKNDSVSVTLAECNGDFDRLIGNGIHEAVESHPHAPQLVATDTRSPLLALQVTLFPNKGFCIGMETHHAIFDGKSASMFLRAWAYTCKYIVEKGEAPRL LPEEITPSFEWKSIQDSKGLEEKYINLWATIGKRLESGSDSNPKSVKPLTKLEVQPNLLRANFHLSSEAIKKLRESVLRYHPEATDPTKRLHLSTYVLAC SYVLICLVKARGGDADREVYFAWSVDCRSRLDPPLPPNHFGDTVVARHIVSKAGDFMQENGLAIIAEKLSASINGLDKGLLEGSSERLEMLLSLGPEVRL ISVAGATGLKFYNTDFGWGNVEKVELTSIDRTGAFSVLDIGNGNDRRTEIGVALKRPEMESFASFFCNGVEVMPFKQIQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Potri.001G395900 [exp]	0	1
AT1G31880		BRX, NIP3;1, NL...	BREVIS RADIX, DZC (Disease res...		Potri.001G131800 [exp]	11.40	0.9017
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Potri.001G468800 [exp]	12.88	0.9153
AT5G27370			Protein of unknown function (D...		Potri.013G027200 [exp]	18.33	0.8976
AT1G73370		ATSUS6, SUS6	ARABIDOPSIS THALIANA SUCROSE S...		Potri.012G037200 [exp]	26.38	0.9023
AT1G03670			ankyrin repeat family protein ...		Potri.013G134466 [exp]	28.42	0.8933
AT5G09220		AAP2	amino acid permease 2 (.1)		Potri.013G103500 [exp]	33.04	0.8765
AT5G21090			Leucine-rich repeat (LRR) fami...		Potri.003G166200 [exp]	41.42	0.9013
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Potri.001G252300 [exp]	41.42	0.8866
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Potri.004G144300 [exp]	42.84	0.8522	SQN.2
AT5G56350			Pyruvate kinase family protein...		Potri.019G032600 [exp]	46.58	0.8331

Compare expression of checked genes

Potri.001G395900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.