Plant FIBer expression Database

Potri.001G396500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G15180 623 / 0 ARM repeat superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027294
[exp]
719 / 0 AT3G15180 576 / 0.0 ARM repeat superfamily protein (.1.2)
Lus10038999
[exp]
132 / 9e-36 AT3G15180 119 / 1e-31 ARM repeat superfamily protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0020 TPR PF10508 Proteasom_PSMB Proteasome non-ATPase 26S subunit
Representative CDS sequence
>Potri.001G396500.3 pacid=42789433 polypeptide=Potri.001G396500.3.p locus=Potri.001G396500 ID=Potri.001G396500.3.v4.1 annot-version=v4.1
ATGGACGGAGAAGAATTCTCAATGGAAGACCCTTCACAGCTGCTCCAATCAGCCTCTGAGTTTGCTAACTATCCAGGCGTTCCAAATGACGTCGCAGCCA
AGGAATTTCTTGATCGTTTTCCGCTTCCAGTCATCATCAATGCTCTGCAAACAAAATCAGAAGTGCCTGGATTAGAAGCAACTTTAGTGGCTTGTTTAGA
AAGAATCTTTAAAACTAAGTGTGGTGCATCGCTTATTCCACACTATATGCCTTTTGTGCAAGTAGGTCTGACGGCAGATTCTCAATTAGTCAGGTGTTTA
GCTTGCAAAACGGTCTCTTGTCTTTTGAAGAATATTGATGAAACCATATCAGCTGCACAGCTGATTATTGACAATGGTGTATATCCGCTTTTGCTTGATT
GTCTCATAAATGGAAATGAACAAGTGGCAACTGCATCAATGGAGGCAATTGAGAAATTAGCTGGCTCTCAAAAAGGCATGGAAATTGTCTTCCCTGCAAA
TAACAGCGATGATATGCACCTAGGAAACTTATCAGCCCGATGTTCATCACTGGGACGTGTCCGGGTATTATCTTTAATAGTGAAATTATTCTCTGTTTCT
AGAGATGTGGCGTCAGCGGTTTACAACTCAAATCTGCTGAGTTTATTGGAGGCAAAAATCAGAGATACAGATGATACTCTTGTATCTCTAAGTGTTTTTG
AACTCTTTTATGAGCTAGCAGAAGTAAAACATGCCACAGAATTCTTATCAAAGACCACTCTTGTCCAACTGCTCTCTTCTACAATCAGCAACATGTCAAA
AGAAGCTATATTAAGATCAAGAGCAATGATGATAAGTGGAAGACTTCTCTCTAATGACAACATATACATGTTCATTGATGAATCCAATTTAGGTGTTAAA
GCCATTATATCAGCCATCGATGGAAGACTTCGGTTAGAAAGTCAAGATTTGAATGAATGTGAATCTGCCCTTGAAGCATTGGGCCAAATAGGATCATCAA
ACCAAGGAGCAACACTACTACTCACAATTTCACCTCCTGCTGCTAGACATGTTATTGATGCGGCCTTTGATAAACATGCACGTGGCAAACAATTGGCTTC
ATTGCACTCTCTTGCAAACATCTCGGGCGAAACTCGATCTGATAGCAACATCATACTGAATGGTGATGCAGAAGAAAGCCTCCGGCTCTTGATCTATGAA
GCAGCATCCAAGAGCTCAAAGCTGACACCATCAGGACTTTTCCTATCAGTTCTTCAACAAGATTCACAAGTTCGACTGGCAGCTTACCGAGTGTTAACTG
GGTTGGTGGCTCGGCCATGGTGCCTGATGGAAATTTGCTCAAAGCAAGAGATAATAAATATAGTGACTGGTCCAAATACTGAAACAACAAAAATAGGTAT
GGAAGCTAGATATAAATGTTGCGTAGCAATCCACAGAGCCTTCATGTCCTCCAGTAAACTTACTGGCAACCCTGCTCTTGCTCCAATAGCTGCCAAGCTG
CAGGAAGCTGTTAGTCGAGGTCCATATCTTGCAGACAAGATTTATCGTGAAGCACAACCTATGGTTGTGACAGCTGATAGATTCTAA
AA sequence
>Potri.001G396500.3 pacid=42789433 polypeptide=Potri.001G396500.3.p locus=Potri.001G396500 ID=Potri.001G396500.3.v4.1 annot-version=v4.1
MDGEEFSMEDPSQLLQSASEFANYPGVPNDVAAKEFLDRFPLPVIINALQTKSEVPGLEATLVACLERIFKTKCGASLIPHYMPFVQVGLTADSQLVRCL
ACKTVSCLLKNIDETISAAQLIIDNGVYPLLLDCLINGNEQVATASMEAIEKLAGSQKGMEIVFPANNSDDMHLGNLSARCSSLGRVRVLSLIVKLFSVS
RDVASAVYNSNLLSLLEAKIRDTDDTLVSLSVFELFYELAEVKHATEFLSKTTLVQLLSSTISNMSKEAILRSRAMMISGRLLSNDNIYMFIDESNLGVK
AIISAIDGRLRLESQDLNECESALEALGQIGSSNQGATLLLTISPPAARHVIDAAFDKHARGKQLASLHSLANISGETRSDSNIILNGDAEESLRLLIYE
AASKSSKLTPSGLFLSVLQQDSQVRLAAYRVLTGLVARPWCLMEICSKQEIINIVTGPNTETTKIGMEARYKCCVAIHRAFMSSSKLTGNPALAPIAAKL
QEAVSRGPYLADKIYREAQPMVVTADRF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G15180 ARM repeat superfamily protein... Potri.001G396500
[exp]
0 1
AT4G32140 EamA-like transporter family (... Potri.006G266400
[exp]
2.00 0.8044
AT5G17850 Sodium/calcium exchanger famil... Potri.013G065900
[exp]
2.44 0.7925
AT3G03341 unknown protein Potri.017G128600
[exp]
5.29 0.7873
AT1G75400 RING/U-box superfamily protein... Potri.005G231500
[exp]
9.43 0.7119
AT5G03340 ATPase, AAA-type, CDC48 protei... Potri.012G088200
[exp]
10.09 0.7995
AT5G08500 Transmembrane CLPTM1 family pr... Potri.004G134500
[exp]
10.81 0.7725
AT1G65730 YSL7 YELLOW STRIPE like 7 (.1) Potri.004G069200
[exp]
10.95 0.7604
AT1G13740 AFP2 ABI five binding protein 2 (.1... Potri.010G157900
[exp]
14.07 0.7834
AT5G47790 FHA SMAD/FHA domain-containing pro... Potri.006G003100
[exp]
15.29 0.7881
AT5G67265 unknown protein Potri.002G122800
[exp]
22.62 0.7842

Potri.001G396500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.