Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15190 147 / 9e-45 chloroplast 30S ribosomal protein S20, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041925 [exp] 164 / 3e-51 AT3G15190 160 / 1e-49 chloroplast 30S ribosomal protein S20, putative (.1) Lus10005538 [exp] 161 / 2e-50 AT3G15190 164 / 2e-51 chloroplast 30S ribosomal protein S20, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01649 [poplar] [flax] Ribosomal_S20p Ribosomal protein S20
Representative CDS sequence Show only first row Show all	>Potri.001G396600.3 pacid=42789425 polypeptide=Potri.001G396600.3.p locus=Potri.001G396600 ID=Potri.001G396600.3.v4.1 annot-version=v4.1 ATGGCGACTTCCCTTCTGTCTCCTTGCTTAGGCCTCCCTCCCAAACTCAAAAACCTCTCCCTTAATTCCACAACATGCTCTACGTCCACTTTCAGCTCCC TCAGTTTCTCCTCTTCCCTCTCTCACAGTATCTTCAACAAAGGGTGTTTGTCAATGAGGACAACTCAAAGATCAATTCACAATTTCTCTATTGTCTGTGA GTCGACTCCAAAGAAAAAGGCGGATTCAGCTGAAAAGAGAACTCGTCAAGCTGAGAAAAGAAGAGTTTATAATAAAGCTCGCAAGTCTGAAGTTAAAACC CGCATGAAGAAGGTCTTGGAAGCACTGGATGATCTGAAAAAGAAACCTGAAGCACAATTTGAGGAGGTCCTTCCTATTGAAAAGCTAATAGCAGAGGCAT ACTCGGTGATTGATAAAGCTATAAAAGTGGGAACCTTACATAGAAACACTGGCGCGCGCAGAAAGTCAAGGCTTGCCCGGAGAAAAAAGGCTGTGGAGAT TCACCATGGCTGGTATAGTCCTGCTCCTGCAGCAGCAACTGCAAGTTAG
AA sequence Show only first row Show all	>Potri.001G396600.3 pacid=42789425 polypeptide=Potri.001G396600.3.p locus=Potri.001G396600 ID=Potri.001G396600.3.v4.1 annot-version=v4.1 MATSLLSPCLGLPPKLKNLSLNSTTCSTSTFSSLSFSSSLSHSIFNKGCLSMRTTQRSIHNFSIVCESTPKKKADSAEKRTRQAEKRRVYNKARKSEVKT RMKKVLEALDDLKKKPEAQFEEVLPIEKLIAEAYSVIDKAIKVGTLHRNTGARRKSRLARRKKAVEIHHGWYSPAPAAATAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G15190			chloroplast 30S ribosomal prot...		Potri.001G396600 [exp]	0	1
AT1G35680		RPL21C	chloroplast ribosomal protein ...		Potri.019G083400 [exp]	1.41	0.9850	Pt-RPL21.3
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Potri.008G118700 [exp]	2.00	0.9863
AT1G64510			Translation elongation factor...		Potri.001G088300 [exp]	3.46	0.9846
AT5G28750			Bacterial sec-independent tran...		Potri.013G040900 [exp]	4.00	0.9739
AT3G12345			unknown protein		Potri.008G047800 [exp]	4.47	0.9842
AT3G01660			S-adenosyl-L-methionine-depend...		Potri.001G340900 [exp]	4.58	0.9812
AT3G54210			Ribosomal protein L17 family p...		Potri.016G143100 [exp]	5.47	0.9837
AT2G47450		CPSRP43, CAO	CHLOROPLAST SIGNAL RECOGNITION...		Potri.009G140500 [exp]	6.00	0.9766	Pt-CAO.3
AT1G54500			Rubredoxin-like superfamily pr...		Potri.013G035700 [exp]	6.92	0.9806
AT5G52960			unknown protein		Potri.012G033700 [exp]	7.34	0.9778

Compare expression of checked genes

Potri.001G396600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.