Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18790 58 / 6e-12 Ribosomal protein L33 family protein (.1) AT3G06320 58 / 6e-12 Ribosomal protein L33 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G025900 [exp] 57 / 7e-12 AT5G18790 107 / 4e-33 Ribosomal protein L33 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012786 [exp] 50 / 9e-09 AT5G18790 106 / 1e-32 Ribosomal protein L33 family protein (.1) Lus10033990 [exp] 50 / 2e-07 AT2G44710 301 / 2e-88 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [poplar] [flax] Zn_Beta_Ribbon PF00471 [poplar] [flax] Ribosomal_L33 Ribosomal protein L33
Representative CDS sequence Show only first row Show all	>Potri.001G396700.1 pacid=42792441 polypeptide=Potri.001G396700.1.p locus=Potri.001G396700 ID=Potri.001G396700.1.v4.1 annot-version=v4.1 ATGATGGTGACAACTGCAATTCACTGCTTGACTCTTCCTTGCATGCCAAGGAATCCATCTCTCACCACCAACCTTTCTCTCTCTTCTCATCTAAAGCTTG CAACTTCCAGGCCTCTCTCTAACCTCCTTTCTCATGGTCTCTTCTCCAAAGGTTTTCTGTCAATAAACACTATTGAGAGGTCAATTCGTCAGTCTGTTGT TTGCATGGCTAGAAGATATGGTGCCAATACTAGGAAGAGAAAGATACAGAGCAGAAGAAAGGGTGGTGACCGAGAGAAGAAGAAGAAGCGTAGAAGGAAG GCAGCCAGGAAGAATAAGGATAGCTTCAAAATCATCCGGCTTGTCTCAGCAGCAGGAACTGGATATGTCTATGCCAAGAGAAAAGGAAAGAGGAGTGAGA AGCTTGAGATTAAGAAATATGACCCTGTTGTCAAGCATCATGTTTTCTTTAAAGAATCAAAATGA
AA sequence Show only first row Show all	>Potri.001G396700.1 pacid=42792441 polypeptide=Potri.001G396700.1.p locus=Potri.001G396700 ID=Potri.001G396700.1.v4.1 annot-version=v4.1 MMVTTAIHCLTLPCMPRNPSLTTNLSLSSHLKLATSRPLSNLLSHGLFSKGFLSINTIERSIRQSVVCMARRYGANTRKRKIQSRRKGGDREKKKKRRRK AARKNKDSFKIIRLVSAAGTGYVYAKRKGKRSEKLEIKKYDPVVKHHVFFKESK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18790			Ribosomal protein L33 family p...		Potri.001G396700 [exp]	0	1
AT5G22850			Eukaryotic aspartyl protease f...		Potri.001G213600 [exp]	2.82	0.7261
AT1G25500			Plasma-membrane choline transp...		Potri.008G118200 [exp]	3.31	0.7446
AT1G22340		ATUGT85A7	UDP-glucosyl transferase 85A7 ...		Potri.016G022500 [exp]	17.32	0.6569
AT2G42610		LSH10	LIGHT SENSITIVE HYPOCOTYLS 10,...		Potri.011G109900 [exp]	20.66	0.7033
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Potri.015G116900 [exp]	21.07	0.7072
AT5G13190		AtGILP	GSH-induced LITAF domain prote...		Potri.001G061900 [exp]	22.71	0.7184
AT5G17680			disease resistance protein (TI...		Potri.019G002500 [exp]	24.37	0.6966
AT5G17640			Protein of unknown function (D...		Potri.013G071000 [exp]	25.03	0.6748
AT1G30760			FAD-binding Berberine family p...		Potri.011G161300 [exp]	27.92	0.6833
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Potri.015G113466 [exp]	29.15	0.7090

Compare expression of checked genes

Potri.001G396700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.