Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07870 99 / 2e-22 F-box and associated interaction domains-containing protein (.1) AT3G17530 83 / 3e-17 F-box and associated interaction domains-containing protein (.1) AT3G10430 74 / 2e-14 F-box and associated interaction domains-containing protein (.1) AT1G11620 73 / 4e-14 F-box and associated interaction domains-containing protein (.1) AT4G12560 71 / 5e-13 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT3G17490 70 / 6e-13 F-box and associated interaction domains-containing protein (.1) AT3G49980 69 / 1e-12 F-box and associated interaction domains-containing protein (.1) AT5G47300 69 / 2e-12 F-box and associated interaction domains-containing protein (.1) AT3G21120 67 / 7e-12 F-box and associated interaction domains-containing protein (.1) AT5G42460 66 / 2e-11 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G215901 [exp] 262 / 2e-83 AT3G07870 103 / 3e-24 F-box and associated interaction domains-containing protein (.1) Potri.008G215800 [exp] 256 / 4e-81 AT3G07870 101 / 3e-23 F-box and associated interaction domains-containing protein (.1) Potri.011G137200 [exp] 227 / 7e-70 AT3G07870 94 / 1e-20 F-box and associated interaction domains-containing protein (.1) Potri.008G216223 [exp] 197 / 2e-59 AT3G07870 93 / 4e-21 F-box and associated interaction domains-containing protein (.1) Potri.011G037312 [exp] 165 / 2e-46 AT3G07870 134 / 3e-35 F-box and associated interaction domains-containing protein (.1) Potri.011G037200 [exp] 163 / 6e-46 AT3G07870 134 / 6e-35 F-box and associated interaction domains-containing protein (.1) Potri.001G129200 [exp] 146 / 1e-39 AT3G07870 110 / 8e-27 F-box and associated interaction domains-containing protein (.1) Potri.008G216000 [exp] 135 / 9e-37 AT1G47340 65 / 9e-12 F-box and associated interaction domains-containing protein (.1) Potri.004G000900 [exp] 125 / 1e-31 AT4G12560 87 / 2e-18 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006403 [exp] 102 / 2e-24 AT3G07870 362 / 2e-124 F-box and associated interaction domains-containing protein (.1) Lus10012355 [exp] 99 / 1e-22 AT3G07870 393 / 2e-135 F-box and associated interaction domains-containing protein (.1) Lus10036105 [exp] 96 / 3e-21 AT3G07870 206 / 1e-61 F-box and associated interaction domains-containing protein (.1) Lus10012358 [exp] 87 / 2e-18 AT3G07870 181 / 3e-52 F-box and associated interaction domains-containing protein (.1) Lus10032458 [exp] 82 / 4e-17 AT4G12560 120 / 1e-30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10038603 [exp] 79 / 2e-15 AT3G06240 110 / 2e-26 F-box family protein (.1) Lus10037892 [exp] 77 / 3e-15 AT3G06240 107 / 7e-26 F-box family protein (.1) Lus10038606 [exp] 74 / 3e-14 AT3G07870 112 / 1e-27 F-box and associated interaction domains-containing protein (.1) Lus10026587 [exp] 70 / 9e-13 AT3G06240 104 / 3e-24 F-box family protein (.1) Lus10037802 [exp] 67 / 5e-12 AT5G49610 497 / 1e-177 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain CL0162 [poplar] [flax] FBA PF07734 [poplar] [flax] FBA_1 F-box associated
Representative CDS sequence Show only first row Show all	>Potri.001G396800.1 pacid=42789013 polypeptide=Potri.001G396800.1.p locus=Potri.001G396800 ID=Potri.001G396800.1.v4.1 annot-version=v4.1 ATGGATCATAGAAGGAAGAAAGTGACAAAAACCGAAACCACCGACCTCCCGGATTGTTTGCTGGAAGAGATACTATCGAGATTGCCCATGAGGTCACCTG CCCTAGGGCAATGCAGGTTGGTTTGCAAAACTTGGCTTCACTTGATTTCAGAGACTTACTTTTCCAAACTAAAGCTTGAATCACACCCTCGCATGTTGGT GAAAACCATACCCGAAACGTACCAATCAAGAGAAATCATTTCAGTTCGGATAGCGGAAGGAGTTAATGGTAGAACTTTCCAGGTTGAGAGGTCAAAGAAG CTTGTTCCGAAAATGGACTTGCCCACTTCAAATTTTGAGTTAGTGAATTCTTGTCATGGTTTGCTTTGCATATCAGAAGGCAAATCCCGCAATGTTATTC ATGTTTGCAATCCAGTTTTTCGTGAGCATATAACAATCTCGGTAAATAGACCCCTGCCGTTTTATCACAATAGTTTTTGTCTTGGACTTGGCATCACCAA TGGCAAATTTGAGTTCAAAGTGTTGCGAACTTTTTGTCTTAAGACCAATAGAAGAGCTCCAGGTTACCCTAGGGCTGAGATATACACAATTGGCACGAAA AAATGGAGACGAATAGGAAATCCTCTTTCTTGCATTGAAAAACTGGATTTTGATACTTCTGTGCATGGTTATATCCACTGGATTCCTGATCAAAAAATTT TGCAGTTTATTTGTTCTTTTAACTTTGGAAAAGAGCAGTTTGGGCAATTGCCATTACCTCCTACATATGATGGAAATGATGCCAGGGTAAAGTTGGGAGT TTTGAAAGATTGTCTATGTGTGAGTGTTCCTGAGAAGGTTGGCAGTGTTGATAAATTTGGCATATGGGTTATGAAGAAGTATGGCATCAAGCAGTCCTGG ATCCAACAGTATGTGATTGAAAACCTCTATCCAGACGTTGGCCGCTTGAAATTTTATGAACCCTTAATTTTCTTGAGCACTGGCGAAATCTTGATATCAT TCAATGGTGAATTCTTAGTCTGCTACAACACAACACTGAAAAAGCTTGCGAAGAAGAGTACAATAACTCAAACTAAGGGAGGTATCCATGCGATTGCATA TAATCCAAGTTTAGTTTCACTCAACGTTGTTGCAAGAGGAGAAAAAGTGCGGACACTGCCAGAGCCAGAGAAAAAGAAAGGTGATGAAGAGGGAAAAGTT TCAACCCTTTCATCTGAGATCGGAGTCAGATTCTGTGAAGGTGAGAGGTTACCAGAGTAA
AA sequence Show only first row Show all	>Potri.001G396800.1 pacid=42789013 polypeptide=Potri.001G396800.1.p locus=Potri.001G396800 ID=Potri.001G396800.1.v4.1 annot-version=v4.1 MDHRRKKVTKTETTDLPDCLLEEILSRLPMRSPALGQCRLVCKTWLHLISETYFSKLKLESHPRMLVKTIPETYQSREIISVRIAEGVNGRTFQVERSKK LVPKMDLPTSNFELVNSCHGLLCISEGKSRNVIHVCNPVFREHITISVNRPLPFYHNSFCLGLGITNGKFEFKVLRTFCLKTNRRAPGYPRAEIYTIGTK KWRRIGNPLSCIEKLDFDTSVHGYIHWIPDQKILQFICSFNFGKEQFGQLPLPPTYDGNDARVKLGVLKDCLCVSVPEKVGSVDKFGIWVMKKYGIKQSW IQQYVIENLYPDVGRLKFYEPLIFLSTGEILISFNGEFLVCYNTTLKKLAKKSTITQTKGGIHAIAYNPSLVSLNVVARGEKVRTLPEPEKKKGDEEGKV STLSSEIGVRFCEGERLPE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07870			F-box and associated interacti...		Potri.001G396800 [exp]	0	1
AT4G20325			unknown protein		Potri.006G280600 [exp]	2.82	0.9098
AT5G07900			Mitochondrial transcription te...		Potri.011G005100 [exp]	3.16	0.8932
AT4G00980			zinc knuckle (CCHC-type) famil...		Potri.002G171900 [exp]	3.46	0.8853
AT1G79870			D-isomer specific 2-hydroxyaci...		Potri.013G046150 [exp]	5.91	0.8715
AT1G52080		AR791	actin binding protein family (...		Potri.003G047200 [exp]	7.48	0.8811
AT1G78080	AP2_ERF	CAF1, RAP2.4, W...	wound induced dedifferentiatio...		Potri.002G094200 [exp]	10.95	0.8416	DREB19
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Potri.016G089000 [exp]	10.95	0.8501
AT4G12570		UPL5	ubiquitin protein ligase 5 (.1...		Potri.016G059800 [exp]	12.40	0.8469
AT5G17680			disease resistance protein (TI...		Potri.019G069500 [exp]	12.96	0.8456
AT3G45880			2-oxoglutarate (2OG) and Fe(II...		Potri.009G025400 [exp]	13.41	0.8518

Compare expression of checked genes

Potri.001G396800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.