Plant FIBer expression Database

Potri.001G397001 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G53930 83 / 1e-16 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G115900
[exp]
505 / 5e-174 AT5G53930 83 / 2e-16 unknown protein
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.001G397001.1 pacid=42793218 polypeptide=Potri.001G397001.1.p locus=Potri.001G397001 ID=Potri.001G397001.1.v4.1 annot-version=v4.1
GGTCGTACAAGGAAGAGAGAAGATACTTGGAGAAGTAAATCAAAGAAGTCGTGGCGTCGTGATGATTCAGAGTCTTATTCCGATGATGATTCGAGAAGTT
CACTGTCTGCCTCAAAGGATGTGAAGGGGACTAAAAAGAGGGCCCGTGCTTGGTCTTCGAGTAGTGAGGAGTCTCCTCATGTGAGAAAGCGAAAAAGGTT
TAAAAGAAATGATGAGAGGAAGAAAACGCACAAGAAGACGAGGAGGAAAAAGAATGCTAGGAGAGATTCAAGTAGTGATGAGAGTGAATATGAGAGGCGC
AAGGGCAGGCTTGAAAAAAGAGAGGATGAAAGAAGAAAACCAGAGAATACTAGAAGTGGAGATGAAAGGAGGAGATACTGGTCAGGAAGTTGTTCATTAT
GCAGTAGATATGATGGAGGCAGTGATATTTTTATGTCAAACACAACGATTGGTGAGAACCCTTCAAAGCGGCCGAGGTCCGTTATTATTCTTCCTGGGGA
GGATAATGAGACGAGAGAATTGGACAAGGATAAGCATAAAGAGGAGATGACATATGATGATGATGATGATTACCCTTCTTCTAGAAACAATGGTAGTAAT
GACGGGCTAAATAACATGGAGAAAAGGCCCATGGAGGATGAAAAAAGAGAAGATTATGCTGCTTCCAATATTGAAGGTAATGAAATCACAGAAAATGACA
AGCATAGTTTTGAAACCCGACCCGGTTATCGACCCGGTCAAGGTGGAATAAATGATGCTAAAAAGGAAAAGAATGAGGTTTCACGGGTTAATATTGATAG
TGTGAGTGGCGATGATTTAGAGACAATTTTAAGACAAAAGGCTTTGGAAAATATAAAAAGTTTCCGAAGTGGACTTGGACAATCCCAAGCAGCTGCAAAG
AGTGCTGCACTGTCCCCTGTGATGCCTGAACTAGGCCAAATTAAATCCTCCAAGAGTAATCTTACCAGAATGCCGAGAGAAGACTATGCTTATTTTTTGC
AACATAAGAAGATTCCCAATGGAGGGATTTGTGGCAGTGAATCTAGCTCTGCTAGGAATAATGTTCATCCACCTGACCAGGTGGCTATTCCTGGCAGAGA
AAAGGTTAGTACAGTTTCTAGTTATAGTAAAAACAAAACATGGTTGATTACATCAGCATCAAGGCAAGCATTATCAAATGCTACCACCACCCTAGAAGAA
ACTTTGGATTCACCGGAAGCTAATCAGGCAAAGTTGGCAAGTGGGACTAGCTTAGGCAAGAGTGCCACCCTGAAAGAAGCACCTACCCCACTGGAAGCCA
ATCAGGCAAAGTTGAGGAGTGGGAGTAATGTAGTTAAGAATGCCACTCATGGTGCTCACACTGTCACCTCTCCCACCTCTCCCATAGTCAATGGCAATGA
TGCCTCTGTTTCTACTCCTGCCGAACCTTCAGCCTGCATTGCATCTTCAGCAGGAGATATTACCTTGAATAAATCGCTTGATGAAGGCAAGGCTGGCTCA
CAGTTGGAACAGAAGACAACGTCTGTAACGTGTGGTGGGGAAATGGTACAGGTGAATTACAAGGTCTACATTCCTAAGAGAATCTCTGCATTGGCTAGGA
GGCAACTCAAGCGGTGA
AA sequence
>Potri.001G397001.1 pacid=42793218 polypeptide=Potri.001G397001.1.p locus=Potri.001G397001 ID=Potri.001G397001.1.v4.1 annot-version=v4.1
GRTRKREDTWRSKSKKSWRRDDSESYSDDDSRSSLSASKDVKGTKKRARAWSSSSEESPHVRKRKRFKRNDERKKTHKKTRRKKNARRDSSSDESEYERR
KGRLEKREDERRKPENTRSGDERRRYWSGSCSLCSRYDGGSDIFMSNTTIGENPSKRPRSVIILPGEDNETRELDKDKHKEEMTYDDDDDYPSSRNNGSN
DGLNNMEKRPMEDEKREDYAASNIEGNEITENDKHSFETRPGYRPGQGGINDAKKEKNEVSRVNIDSVSGDDLETILRQKALENIKSFRSGLGQSQAAAK
SAALSPVMPELGQIKSSKSNLTRMPREDYAYFLQHKKIPNGGICGSESSSARNNVHPPDQVAIPGREKVSTVSSYSKNKTWLITSASRQALSNATTTLEE
TLDSPEANQAKLASGTSLGKSATLKEAPTPLEANQAKLRSGSNVVKNATHGAHTVTSPTSPIVNGNDASVSTPAEPSACIASSAGDITLNKSLDEGKAGS
QLEQKTTSVTCGGEMVQVNYKVYIPKRISALARRQLKR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G53930 unknown protein Potri.001G397001
[exp]
0 1
AT1G31360 MED34, ATRECQ2,... ARABIDOPSIS THALIANA RECQ 2, ... Potri.003G104300
[exp]
3.87 0.7771
AT4G21300 Tetratricopeptide repeat (TPR)... Potri.011G156800
[exp]
14.89 0.7590
AT2G38420 Pentatricopeptide repeat (PPR)... Potri.006G106400
[exp]
19.07 0.6849
AT3G29310 calmodulin-binding protein-rel... Potri.004G124301
[exp]
26.32 0.7682
AT5G54650 ATFH5, Fh5 FORMIN HOMOLOGY 5, formin homo... Potri.001G416100
[exp]
28.14 0.7395
AT4G38070 bHLH basic helix-loop-helix (bHLH) ... Potri.007G010500
[exp]
38.83 0.7047
AT5G61580 PFK4 phosphofructokinase 4 (.1.2) Potri.001G079450
[exp]
44.94 0.7188
AT1G69480 EXS (ERD1/XPR1/SYG1) family pr... Potri.010G165001
[exp]
45.72 0.7238
AT5G05800 unknown protein Potri.005G135800
[exp]
48.90 0.6588
AT2G16390 DMS1, CHR35, DR... DEFECTIVE IN RNA-DIRECTED DNA ... Potri.004G159000
[exp]
48.98 0.7258

Potri.001G397001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.