Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15220 828 / 0 Protein kinase superfamily protein (.1) AT1G53165 751 / 0 ATMAP4KALPHA1 ,ATMAP4K ALPHA1 Protein kinase superfamily protein (.1.2.3) AT1G69220 254 / 2e-73 SIK1 Protein kinase superfamily protein (.1.2) AT5G14720 217 / 4e-61 Protein kinase superfamily protein (.1) AT1G79640 217 / 5e-61 Protein kinase superfamily protein (.1.2) AT4G24100 208 / 8e-58 Protein kinase superfamily protein (.1) AT4G10730 207 / 3e-57 Protein kinase superfamily protein (.1) AT1G53570 193 / 6e-53 MAPKKK3, MAP3KA MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) AT1G63700 194 / 4e-52 EMB71, MAPKKK4, YDA YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) AT1G70430 183 / 2e-49 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G116300 [exp] 1124 / 0 AT3G15220 817 / 0.0 Protein kinase superfamily protein (.1) Potri.010G157400 [exp] 254 / 1e-73 AT1G69220 855 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G349300 [exp] 219 / 9e-62 AT5G14720 963 / 0.0 Protein kinase superfamily protein (.1) Potri.003G186700 [exp] 214 / 8e-60 AT1G79640 862 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G084700 [exp] 214 / 1e-59 AT4G10730 905 / 0.0 Protein kinase superfamily protein (.1) Potri.001G037900 [exp] 211 / 3e-59 AT1G79640 858 / 0.0 Protein kinase superfamily protein (.1.2) Potri.003G146000 [exp] 212 / 7e-59 AT4G10730 902 / 0.0 Protein kinase superfamily protein (.1) Potri.015G146700 [exp] 196 / 9e-53 AT1G63700 826 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.001G102900 [exp] 196 / 1e-52 AT1G63700 868 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042862 [exp] 862 / 0 AT3G15220 827 / 0.0 Protein kinase superfamily protein (.1) Lus10028163 [exp] 837 / 0 AT1G53165 769 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10037070 [exp] 252 / 1e-72 AT1G69220 909 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036915 [exp] 252 / 1e-72 AT1G69220 917 / 0.0 Protein kinase superfamily protein (.1.2) Lus10014542 [exp] 215 / 7e-60 AT5G14720 895 / 0.0 Protein kinase superfamily protein (.1) Lus10026108 [exp] 214 / 7e-60 AT1G79640 789 / 0.0 Protein kinase superfamily protein (.1.2) Lus10000416 [exp] 214 / 1e-59 AT1G79640 760 / 0.0 Protein kinase superfamily protein (.1.2) Lus10000878 [exp] 213 / 4e-59 AT4G24100 887 / 0.0 Protein kinase superfamily protein (.1) Lus10033230 [exp] 212 / 8e-59 AT4G24100 895 / 0.0 Protein kinase superfamily protein (.1) Lus10001677 [exp] 206 / 5e-56 AT4G10730 892 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.001G397600.8 pacid=42788198 polypeptide=Potri.001G397600.8.p locus=Potri.001G397600 ID=Potri.001G397600.8.v4.1 annot-version=v4.1 ATGGCTGATGCAGCTGGGTTAATGGAGGCCGCTGGGGCTAGATTTAGTTCGTTGGAGTTGATCGGGAGAGGATCGTTTGGCGATGTTTATAAAGCGTTTG ATAAGGAGCTTGACAAAGAAGTTGCTATCAAAGTTATTGATTTGGAAGAATCTGAGGATGAAATTGAAGACATTCAAAAGGAAATTTCTGTTTTGCGACA ATGTCGTTCTCCATACATCACAGAGTACTATGGATCCTATCTTCACCAGACGAAACTATGGATAATTATGGAGTACATGGCTGGTGGATCTGTTGCTGAC CTACTGCAGTCAGGTCCTCCACTGGATGAAATGTCAATTGCTTGTATTTTACGGGACTTGCTGCATGCTATTGAATATTTACATAATGAAGGAAAAATTC ACAGAGATATTAAAGCTGCAAACATATTGTTGAGCGAGAATGGTGATGTTAAGGTTGCAGATTTTGGCGTTTCTGCACAGTTAACTGGAACAGTATCGAG GAGAAAGACTTTTGTAGGAACACCATTCTGGATGGCTCCAGAGGTGATTCAGAATTCAGAAGGATATAATGTGAAGGCAGATATTTGGTCTCTAGGGATA ACTGCTATTGAGATGGCAAAAGGGGAACCTCCACTTGCTGATCTTCATCCTATGAGGGTTCTCTTTATCATACCTCGAGAAAATCCACCACAGCTGGATG AACACTTTTCTCGTCCTATGAAAGAGTTCGTCTCGTTCTGTTTAAAGAAAGTTCCTGCCGAGAGGCCAACTGCTAAGGAACTTCTAAGGCATCGGTTTAT TAGAAATGCTAGAAAGAGCCCAAGGCTTTTGGAAAGAATAAGAGAGCGTCCAATGTACCAGATAAAGGATGCAGAAACCCCCAGAAATGGTCCAATAGGA ATAGGGGAAGGTTTTGATACTGTGAAGGTTGTAAGAGACTTGAGGGCTGATGGAACTGTTCGAGCCAGCGGTCAGGGAAAGCCCTTCAAAAATGCTGGAT GGGACTTCAGCATTGGTGGATCACAGACTACAGGAACCATTAGAAGTGCTGCAAGACCACCTCAGGTTAGAGAAAAGAAAACAGATATTTCATACAATAA GGATACCCAAAGAAGAGCTTCAGAGAGTGGTAATCATTTGTTGTCTGCATCTGGAAATGCACTTCAGGAATCACTGGAATTATCCTATGGTAAAGATGCT AGGGATCCATATCATGATGATCATCAGGATAATTCCTATGATGATGATGATTTGTCCGTGAGTGGATCAGGAACTGTTGTCATACGGACTCCTAAAGGAT ATCAGTCATCTGCCTTGTTTCGAGATCAAAACAATGCGTCTAGCAGCACATCGACTTCTTTTGAAGATGCTTCTACCAGTGGAACAGTTGTTTTCCGTGG CCAACATGATGAATCTGATTCTCCTCGGACTCATAAATCCAGATTAGGAATGCAAGAGAGAACTTCAAGTTCCTCACTGGAGGACAGTGCTCTAAATCTT GCCGAGGCAAGGGCCGCGCTTCAAGGAGGGTTGAGGAAAGTAAATGCTAGAGAAAGGTTTGTACCAAGCAATAATAATAGATATGGGCTGGAGAACAGAA GAAGAGAGCAATTGACAAACAGCTCTGATTCTTCCAGAAGTTCTCGTGAATACTTCGATGCACCAAAAGCTTTTCCAAGATCACAGCAAGCCAGCAATGT TGAAGAAAGTGCAAGAATAGCATCAGCATCTTTGTCAGTTTTGCTTATCCCATCCTTAAAAGAGGCTGTTGCTGATGATTCAGAAAGAGCACTTTTTCAT GCAGTCACAAATTCGCTTGTAAATATGGAGCGGGTAAAGCCTGGATCTTGTGATATCTTTGTCAGAAGTTTGCTTCAGCAGTTGGCAAGTTCGAAAGAAT CTTCACTGAGAGATCTGCAGGAGCTTGCAGCTCACCTATTAAGCAAGGGCAAGACAACCCCTGAAGAAACACAAAATGGAAATACAGATGTTGATAGCAG GAAAAAGCAACCGACCAAGGAATTTAATTCAAATGCCAATTTAAGTCCTCTTGCGAGATTTCTGCTCTCAAGATGGCAAGGCCAAGTTTCACGAGATGTC AATCCAACTTGA
AA sequence Show only first row Show all	>Potri.001G397600.8 pacid=42788198 polypeptide=Potri.001G397600.8.p locus=Potri.001G397600 ID=Potri.001G397600.8.v4.1 annot-version=v4.1 MADAAGLMEAAGARFSSLELIGRGSFGDVYKAFDKELDKEVAIKVIDLEESEDEIEDIQKEISVLRQCRSPYITEYYGSYLHQTKLWIIMEYMAGGSVAD LLQSGPPLDEMSIACILRDLLHAIEYLHNEGKIHRDIKAANILLSENGDVKVADFGVSAQLTGTVSRRKTFVGTPFWMAPEVIQNSEGYNVKADIWSLGI TAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDEHFSRPMKEFVSFCLKKVPAERPTAKELLRHRFIRNARKSPRLLERIRERPMYQIKDAETPRNGPIG IGEGFDTVKVVRDLRADGTVRASGQGKPFKNAGWDFSIGGSQTTGTIRSAARPPQVREKKTDISYNKDTQRRASESGNHLLSASGNALQESLELSYGKDA RDPYHDDHQDNSYDDDDLSVSGSGTVVIRTPKGYQSSALFRDQNNASSSTSTSFEDASTSGTVVFRGQHDESDSPRTHKSRLGMQERTSSSSLEDSALNL AEARAALQGGLRKVNARERFVPSNNNRYGLENRRREQLTNSSDSSRSSREYFDAPKAFPRSQQASNVEESARIASASLSVLLIPSLKEAVADDSERALFH AVTNSLVNMERVKPGSCDIFVRSLLQQLASSKESSLRDLQELAAHLLSKGKTTPEETQNGNTDVDSRKKQPTKEFNSNANLSPLARFLLSRWQGQVSRDV NPT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G15220			Protein kinase superfamily pro...		Potri.001G397600 [exp]	0	1
AT5G24400		PGL3, EMB2024	6-PHOSPHOGLUCONOLACTONASE 3, E...		Potri.015G008401 [exp]	6.00	0.8809
AT2G28580			Plant protein of unknown funct...		Potri.007G132300 [exp]	6.32	0.9024
AT4G37940	MADS	AGL21	AGAMOUS-like 21 (.1)		Potri.009G079000 [exp]	6.92	0.8740
AT5G53310			myosin heavy chain-related (.1...		Potri.015G023400 [exp]	11.66	0.8734
AT1G57790			F-box family protein (.1)		Potri.012G106800 [exp]	13.07	0.8950
AT4G14240			CBS domain-containing protein ...		Potri.008G202100 [exp]	14.49	0.8773
AT5G48890	C2H2ZnF	LATE	LATE FLOWERING, C2H2-like zinc...		Potri.014G178200 [exp]	16.06	0.8243
AT2G40490		HEME2	Uroporphyrinogen decarboxylase...		Potri.013G083200 [exp]	17.14	0.8194
AT1G60460			unknown protein		Potri.010G041900 [exp]	18.43	0.8805
AT1G71820		SEC6	SEC6 (.1.2)		Potri.019G088100 [exp]	20.49	0.8400

Compare expression of checked genes

Potri.001G397600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.