Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39490 480 / 5e-166 CYP96A10 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) AT2G23180 476 / 1e-164 CYP96A1 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) AT1G47620 452 / 7e-155 CYP96A8 "cytochrome P450, family 96, subfamily A, polypeptide 8", cytochrome P450, family 96, subfamily A, polypeptide 8 (.1) AT4G39480 445 / 4e-152 CYP96A9 "cytochrome P450, family 96, subfamily A, polypeptide 9", cytochrome P450, family 96, subfamily A, polypeptide 9 (.1) AT1G57750 442 / 3e-151 MAH1, CYP96A15 MID-CHAIN ALKANE HYDROXYLASE 1, "cytochrome P450, family 96, subfamily A, polypeptide 15", cytochrome P450, family 96, subfamily A, polypeptide 15 (.1.2) AT4G32170 437 / 2e-149 CYP96A2 "cytochrome P450, family 96, subfamily A, polypeptide 2", cytochrome P450, family 96, subfamily A, polypeptide 2 (.1) AT5G52320 436 / 4e-149 CYP96A4 "cytochrome P450, family 96, subfamily A, polypeptide 4", cytochrome P450, family 96, subfamily A, polypeptide 4 (.1) AT4G39510 435 / 2e-148 CYP96A12 "cytochrome P450, family 96, subfamily A, polypeptide 12", cytochrome P450, family 96, subfamily A, polypeptide 12 (.1) AT1G65340 430 / 1e-146 CYP96A3 "cytochrome P450, family 96, subfamily A, polypeptide 3", cytochrome P450, family 96, subfamily A, polypeptide 3 (.1) AT4G39500 428 / 3e-146 CYP96A11 "cytochrome P450, family 96, subfamily A, polypeptide 11", cytochrome P450, family 96, subfamily A, polypeptide 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G064400 [exp] 584 / 0 AT4G39490 477 / 8e-165 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.015G086900 [exp] 518 / 0 AT2G23180 455 / 2e-156 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Potri.015G132800 [exp] 513 / 6e-179 AT4G39490 589 / 0.0 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.007G080300 [exp] 491 / 4e-170 AT4G39490 574 / 0.0 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.015G087000 [exp] 436 / 2e-150 AT2G23180 373 / 2e-125 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Potri.007G072100 [exp] 406 / 2e-136 AT5G23190 799 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.005G092200 [exp] 404 / 1e-135 AT5G23190 788 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.008G125300 [exp] 389 / 1e-130 AT4G39490 410 / 4e-139 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.010G050100 [exp] 385 / 1e-128 AT1G24540 684 / 0.0 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022279 [exp] 476 / 2e-164 AT2G23180 449 / 4e-154 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10002527 [exp] 476 / 2e-164 AT2G23180 454 / 7e-156 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10003669 [exp] 473 / 4e-163 AT2G23180 440 / 4e-150 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10022277 [exp] 445 / 4e-152 AT4G39490 395 / 1e-132 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10002525 [exp] 443 / 3e-151 AT4G39490 410 / 2e-138 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10025677 [exp] 432 / 3e-147 AT2G23180 361 / 1e-119 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10025678 [exp] 427 / 1e-145 AT4G39490 363 / 9e-121 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10028047 [exp] 427 / 2e-145 AT2G21910 375 / 1e-125 "cytochrome P450, family 96, subfamily A, polypeptide 5", cytochrome P450, family 96, subfamily A, polypeptide 5 (.1) Lus10015306 [exp] 418 / 2e-137 AT4G39490 342 / 3e-108 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10017394 [exp] 398 / 3e-133 AT5G23190 739 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.001G397900.1 pacid=42791473 polypeptide=Potri.001G397900.1.p locus=Potri.001G397900 ID=Potri.001G397900.1.v4.1 annot-version=v4.1 ATGGAAATATTTGACATACTTGCAGTTGTAGGAGTACTTGTTTGTTTTCTCTTGCTTCGTTGCTGGGATCAGATCAGGAAGCTAGACGCAGATAAAAGAA ACTGGCCAATTGTAGGGATGCTACCACGGCTCCTTATCAATTCATCAAACGTGTATGAGTATACCACGCGAACCCTGAGAAATAATGGAGGAACTTCAAA GTTCAAGGGTCCTTGGTTTGCCAACATGGACTTCGTGATCACTAGCGATCCTAAGAATGTGCACCACATCTTGAGCGACAACTTCGCAAACTATCCAAAG GGACCTGTGTACAAGAAGATTTTTGAGCCTCTAGGAGATGGGATTCTCAATTCCGATTCGGAGTCATGGAGAGCACAGAGGAAAATGATTCAGCTATTCA TGAAGAACAACAAGTACAAGGAATTGGTAGAGAAGACCATCCTCCAGAAGTTGGTTCAAGGCCTATTTCCAATCCTGGATCATGTCTCCAGAAAAGAAAT GTCGGAGATAATAGACATGCAAGATGTGATTCAGCGGTTCATGTATGATAGTAACTGCATGTCTGTTTTGGGTTTCGATCCAAATTGTCTCACGATTGAA TTTCCTGAGGTTGCACATGCAAAAGCTTTCGATATCATGGAGGAGGCAGTATTCTACCGGCACATCGTGCCGGAGTTTTACTGGAAGTTTCAAAAATGGC TTCAAATCGGAGAAGAGAAGAAACTAAGTAGAGCTTTGCAGACATTTGATCAATTCATGTACAAATGCATCTCAACAAGGTGCGAGCAAGTCTTAAACGA AAATAAAGCCAAAATGGAGAATATTGTCGAGGAGAAGGAAGCTGCAGACTTCGACTTACTAACAGCTTATATCAAAGTTCAAATGAAAGAGCATGGAAAC AGTGCAGCTTCTTCAAACAAGTTCTTAAGAGACACGGCAACTAATCTCCTGGTGGCCGGGAGAGACACTCCCAGTGCAGGCCTTGTTTGGTTCTTCTGGC TTGTCGCAGAGCATCCACTAGTAGAAAGCAAGATATTAGAAGAGATTAGAGCAGCAAATTTGGTGAAGGAAAAGGATGGGAAGCTGAGGGTTTTCAGTGC AGAAGAGGTAAATGGCCTGGTTTATCTTCACGCAGCCATGTGTGAGACACTGCGGCTATACCCATCAGTGCATACTAATCACAAGGCTGCAGTTGAAGAA GATACACTTCCGAGCGGTCATCGCATCCGACGGAAGATGCAGGTCTTGATTTCCTTCTACTCAATGGGGAGAATGGAAGCAATTTGGGGCAAAGATTGCC TAGAATTCAAGCCTGAGAGGTGGATTTCTGATAAAGGAGGTATTATACACGTACCACCTTACAAGTTTGCTGCGTTCAACGATGGGCCAAGGACTTGCCT GGGAAAAGACGTCAGCTTTATTCAAATGAAGATGGTTGCCTGTGCAGTGCTCTGGAATTATCATGTTCAAGTGGTTGAAGGCCATCAGGTTTTCCCGAGT GTTGCTGTTGTACTTCATATGAAGAATGGCTTGAAGGTTAGGATCACCAAGAGATGCTAA
AA sequence Show only first row Show all	>Potri.001G397900.1 pacid=42791473 polypeptide=Potri.001G397900.1.p locus=Potri.001G397900 ID=Potri.001G397900.1.v4.1 annot-version=v4.1 MEIFDILAVVGVLVCFLLLRCWDQIRKLDADKRNWPIVGMLPRLLINSSNVYEYTTRTLRNNGGTSKFKGPWFANMDFVITSDPKNVHHILSDNFANYPK GPVYKKIFEPLGDGILNSDSESWRAQRKMIQLFMKNNKYKELVEKTILQKLVQGLFPILDHVSRKEMSEIIDMQDVIQRFMYDSNCMSVLGFDPNCLTIE FPEVAHAKAFDIMEEAVFYRHIVPEFYWKFQKWLQIGEEKKLSRALQTFDQFMYKCISTRCEQVLNENKAKMENIVEEKEAADFDLLTAYIKVQMKEHGN SAASSNKFLRDTATNLLVAGRDTPSAGLVWFFWLVAEHPLVESKILEEIRAANLVKEKDGKLRVFSAEEVNGLVYLHAAMCETLRLYPSVHTNHKAAVEE DTLPSGHRIRRKMQVLISFYSMGRMEAIWGKDCLEFKPERWISDKGGIIHVPPYKFAAFNDGPRTCLGKDVSFIQMKMVACAVLWNYHVQVVEGHQVFPS VAVVLHMKNGLKVRITKRC

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Potri.001G397900 [exp]	0	1
AT2G03200			Eukaryotic aspartyl protease f...		Potri.001G020400 [exp]	18.02	0.5882
AT5G64080		AtXYP1	xylogen protein 1, Bifunctiona...		Potri.005G169000 [exp]	29.39	0.5711
					Potri.010G000901 [exp]	40.47	0.5768
					Potri.002G234850 [exp]	44.40	0.5420
					Potri.003G025702 [exp]	49.83	0.5738
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.004G218101 [exp]	53.24	0.5847
AT2G20650			RING/U-box superfamily protein...		Potri.001G400600 [exp]	57.70	0.6002
AT4G31320			SAUR-like auxin-responsive pro...		Potri.013G054600 [exp]	66.09	0.5879	SAUR9
					Potri.016G004700 [exp]	70.83	0.5284
					Potri.016G095001 [exp]	89.62	0.5188

Compare expression of checked genes

Potri.001G397900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.