Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15260 469 / 5e-169 Protein phosphatase 2C family protein (.1.2) AT4G28400 404 / 2e-143 Protein phosphatase 2C family protein (.1) AT2G20630 389 / 1e-137 PIA1 PP2C induced by AVRRPM1 (.1.2) AT1G22280 327 / 5e-113 PAPP2C phytochrome-associated protein phosphatase type 2C (.1.2.3) AT1G34750 325 / 3e-112 Protein phosphatase 2C family protein (.1) AT1G78200 289 / 4e-98 Protein phosphatase 2C family protein (.1.2) AT2G34740 290 / 1e-97 Protein phosphatase 2C family protein (.1.2) AT5G24940 210 / 3e-65 Protein phosphatase 2C family protein (.1) AT5G10740 204 / 6e-64 Protein phosphatase 2C family protein (.1) AT4G31750 200 / 6e-63 WIN2 HOPW1-1-interacting 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G116700 [exp] 532 / 0 AT3G15260 439 / 5e-157 Protein phosphatase 2C family protein (.1.2) Potri.017G013300 [exp] 426 / 3e-152 AT4G28400 439 / 2e-157 Protein phosphatase 2C family protein (.1) Potri.005G164600 [exp] 345 / 6e-120 AT1G34750 450 / 1e-161 Protein phosphatase 2C family protein (.1) Potri.002G097200 [exp] 341 / 2e-118 AT1G34750 449 / 2e-161 Protein phosphatase 2C family protein (.1) Potri.006G081400 [exp] 335 / 8e-116 AT4G28400 348 / 3e-121 Protein phosphatase 2C family protein (.1) Potri.018G150800 [exp] 334 / 2e-115 AT4G28400 340 / 1e-117 Protein phosphatase 2C family protein (.1) Potri.006G267600 [exp] 205 / 8e-65 AT4G31750 535 / 0.0 HOPW1-1-interacting 2 (.1) Potri.018G013900 [exp] 203 / 3e-64 AT4G31750 533 / 0.0 HOPW1-1-interacting 2 (.1) Potri.002G074500 [exp] 194 / 1e-60 AT1G43900 429 / 1e-151 Protein phosphatase 2C family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018618 [exp] 406 / 5e-144 AT4G28400 427 / 2e-152 Protein phosphatase 2C family protein (.1) Lus10039853 [exp] 403 / 5e-143 AT4G28400 427 / 2e-152 Protein phosphatase 2C family protein (.1) Lus10005405 [exp] 391 / 3e-138 AT3G15260 370 / 3e-130 Protein phosphatase 2C family protein (.1.2) Lus10009210 [exp] 390 / 4e-137 AT3G15260 300 / 4e-101 Protein phosphatase 2C family protein (.1.2) Lus10028094 [exp] 345 / 1e-119 AT4G28400 360 / 8e-126 Protein phosphatase 2C family protein (.1) Lus10040565 [exp] 343 / 3e-119 AT4G28400 359 / 1e-125 Protein phosphatase 2C family protein (.1) Lus10008556 [exp] 342 / 2e-118 AT4G28400 352 / 1e-122 Protein phosphatase 2C family protein (.1) Lus10020924 [exp] 337 / 5e-117 AT1G34750 438 / 7e-157 Protein phosphatase 2C family protein (.1) Lus10033453 [exp] 300 / 2e-102 AT1G34750 369 / 7e-130 Protein phosphatase 2C family protein (.1) Lus10038455 [exp] 295 / 1e-100 AT2G34740 327 / 1e-112 Protein phosphatase 2C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [poplar] [flax] PP2C PF00481 [poplar] [flax] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Potri.001G398100.1 pacid=42789847 polypeptide=Potri.001G398100.1.p locus=Potri.001G398100 ID=Potri.001G398100.1.v4.1 annot-version=v4.1 ATGATTGGCAAAGAAATCCTACACAAGATGAAGGAAAAGGTTGGATTAGGTTCTTCTCCAGATTGTGGAAAGGGCAAGAGTAAGATTTCGAAGCACATAA CACATGGCTTTCACTTAGTAAAGGGGAAATCACATCATGACATGGAAGATTATGTTGTTGCTCAATTTAAGGAAGTCGATGACAATGAACTTGGTTTGTT TGCAATATTTGATGGTCATCTCAGCCATGTTATTCCTGATTATTTGCGGTCTCATTTGTTTGACAATATCTTGAAGGAGCCAGACTTTTGGACACAGCCA AAAAATGCTATGAGGAGAGCATATTGTATTACTGATACTACAATTTTGGAGAAAGCTGGTGATTTGGGTAAAGGAGGTTCAACGGCTGTCACTGCTATAC TAATTAACTGTCAGAAGCTGGTAGTAGCAAATGTAGGTGACTCACGAGCTGTTATCTGCAAGAATGGTGTTGCCAAACAACTCTCAGTTGATCATGAGCC AAGCATGGAAAGGGAGGAAATCGAGAACAGAGGTGGCTTTGTGTCAAACTTTCCAGGGGATGTCCCACGTGTTGATGGACAGTTGGCAGTGGCAAGGGCA TTTGGTGACAAGAGCTTGAAGGAACATCTGAGTTCAGAACCAGATGTCGCAATGGAGATGATTGATGATGATACAGATTGTATTATCTTAGCAAGTGACG GGTTGTGGAAGGTGATGTCCAACCAAGAAGCGGTGGATGCTGTCAAGAACATAAAGGATGCGCTGTCTGCAGCAAAGCGGCTTACTGAAGAAGCACTTAA TAGGAAGAGTTCAGACGACATTTCCTGTGTGGTTGTGAAATTTCAGTGA
AA sequence Show only first row Show all	>Potri.001G398100.1 pacid=42789847 polypeptide=Potri.001G398100.1.p locus=Potri.001G398100 ID=Potri.001G398100.1.v4.1 annot-version=v4.1 MIGKEILHKMKEKVGLGSSPDCGKGKSKISKHITHGFHLVKGKSHHDMEDYVVAQFKEVDDNELGLFAIFDGHLSHVIPDYLRSHLFDNILKEPDFWTQP KNAMRRAYCITDTTILEKAGDLGKGGSTAVTAILINCQKLVVANVGDSRAVICKNGVAKQLSVDHEPSMEREEIENRGGFVSNFPGDVPRVDGQLAVARA FGDKSLKEHLSSEPDVAMEMIDDDTDCIILASDGLWKVMSNQEAVDAVKNIKDALSAAKRLTEEALNRKSSDDISCVVVKFQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G15260			Protein phosphatase 2C family ...		Potri.001G398100 [exp]	0	1
AT1G67350			unknown protein		Potri.001G055400 [exp]	4.89	0.6733
AT5G53560		B5#2, ATB5-A, A...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Potri.012G024600 [exp]	28.08	0.6440
AT1G55265			Protein of unknown function, D...		Potri.001G008240 [exp]	47.48	0.5556
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Potri.004G160300 [exp]	49.47	0.5752	RD19.3
AT1G60810		ACLA-2	ATP-citrate lyase A-2 (.1)		Potri.008G188900 [exp]	50.73	0.6056	Pt-ACLA.1
AT2G43790		ATMAPK6, MAPK6,...	MAP kinase 6 (.1)		Potri.007G139800 [exp]	60.92	0.6012	Pt-MPK6.1
AT3G02520		GENERALREGULATO...	general regulatory factor 7 (....		Potri.004G101700 [exp]	62.22	0.5863
AT4G34640		ERG9, SQS1	squalene synthase 1 (.1)		Potri.004G161200 [exp]	65.45	0.5503
AT5G51570			SPFH/Band 7/PHB domain-contain...		Potri.015G130600 [exp]	83.16	0.5221
AT5G49810		MMT	methionine S-methyltransferase...		Potri.004G229800 [exp]	85.52	0.5040	Pt-MMT.1,MMT

Compare expression of checked genes

Potri.001G398100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.