Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15280 52 / 1e-08 unknown protein AT5G53895 39 / 0.0003 unknown protein AT4G27530 39 / 0.0004 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G046000 [exp] 42 / 6e-05 AT4G21020 64 / 4e-12 Late embryogenesis abundant protein (LEA) family protein (.1) Potri.011G054200 [exp] 42 / 0.0001 AT4G21020 96 / 1e-23 Late embryogenesis abundant protein (LEA) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009211 [exp] 69 / 8e-15 AT3G15280 67 / 2e-14 unknown protein Lus10005404 [exp] 53 / 4e-09 AT3G15280 53 / 2e-09 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G398300.2 pacid=42789836 polypeptide=Potri.001G398300.2.p locus=Potri.001G398300 ID=Potri.001G398300.2.v4.1 annot-version=v4.1 ATGGCAGCACTATTTTTGGCAAAAAGAGCCGTCATTAACATCTCTAGAGCTTCATCCAAGGATCACCCTCGTTGTGTTGTGTCTGCCAACAGGGCTTACT TCTCCACTGCTTTTCAACGAGCTCAAGGTACCAGTGTAGCAGCAGAGACAAGAAGAGAAACAAATAGCCCAGATAGGACACCACGAAAATCTTATAGTGC AACAAATTATCGAACTAGGCAAGGCTTAGACCCTGATGAATATGCAGGAGTAGGAGCAAAACAGTTTGTGGCTGACACTGCCAAAGAAGGGGTTAGAAAA GCAACACAAGTAGCAGACATGATTGGGGACGCGGCTAAGGAAACAATAGATGGTGCACGGGAAGCAGCCAAAGAGGCTAACCAAAAGGTTAGAGAGACAG TAGGTGGTGGAAATGATGATAGTAACAGTCATGATCATAACAGCCACGACAAGAACAATAATAACGTGGAAGATCCAGTGTTTGTTGAGGTCCATAAGTT GATGGACCAGCTGTTGATACAGTAG
AA sequence Show only first row Show all	>Potri.001G398300.2 pacid=42789836 polypeptide=Potri.001G398300.2.p locus=Potri.001G398300 ID=Potri.001G398300.2.v4.1 annot-version=v4.1 MAALFLAKRAVINISRASSKDHPRCVVSANRAYFSTAFQRAQGTSVAAETRRETNSPDRTPRKSYSATNYRTRQGLDPDEYAGVGAKQFVADTAKEGVRK ATQVADMIGDAAKETIDGAREAAKEANQKVRETVGGGNDDSNSHDHNSHDKNNNNVEDPVFVEVHKLMDQLLIQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G15280			unknown protein		Potri.001G398300 [exp]	0	1
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Potri.006G242500 [exp]	1.00	0.8704
AT4G37270		ATHMA1, HMA1	ARABIDOPSIS THALIANA HEAVY MET...		Potri.005G142732 [exp]	2.23	0.8126
					Potri.006G276250 [exp]	3.31	0.7889
AT5G03730		AtCTR1, SIS1, C...	SUGAR-INSENSITIVE 1, CONSTITUT...		Potri.008G025800 [exp]	4.24	0.7990
AT2G43970			RNA-binding protein (.1.2)		Potri.017G007400 [exp]	4.89	0.8106
					Potri.004G100301 [exp]	7.48	0.8038
AT5G46840			RNA-binding (RRM/RBD/RNP motif...		Potri.003G093900 [exp]	10.24	0.6985
AT3G28430			unknown protein		Potri.006G073600 [exp]	10.81	0.7616
AT3G55320		ABCB20, PGP20	ATP-binding cassette B20, P-gl...		Potri.010G210100 [exp]	12.00	0.7326
AT3G10550		MTM1, AtMTM1	Arabidopsis thaliana myotubula...		Potri.008G026900 [exp]	15.19	0.8052

Compare expression of checked genes

Potri.001G398300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.