Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53890 1268 / 0 AtPSKR2 phytosylfokine-alpha receptor 2 (.1) AT2G02220 876 / 0 ATPSKR1 phytosulfokin receptor 1 (.1) AT1G72300 820 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT1G55610 504 / 4e-160 BRL1 BRI1 like (.1.2) AT3G13380 495 / 6e-157 BRL3 BRI1-like 3 (.1) AT2G01950 469 / 5e-147 VH1, BRL2 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) AT5G07280 469 / 1e-146 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT4G20140 443 / 1e-136 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G17240 426 / 2e-135 AtRLP2 receptor like protein 2 (.1) AT5G44700 430 / 1e-131 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G116900 [exp] 1782 / 0 AT5G53890 1279 / 0.0 phytosylfokine-alpha receptor 2 (.1) Potri.008G144700 [exp] 880 / 0 AT2G02220 1258 / 0.0 phytosulfokin receptor 1 (.1) Potri.010G097700 [exp] 874 / 0 AT2G02220 1187 / 0.0 phytosulfokin receptor 1 (.1) Potri.003G074000 [exp] 858 / 0 AT1G72300 1215 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G161000 [exp] 845 / 0 AT1G72300 1199 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G472900 [exp] 494 / 5e-156 AT1G55610 1485 / 0.0 BRI1 like (.1.2) Potri.010G101100 [exp] 489 / 8e-155 AT2G01950 1510 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Potri.012G139000 [exp] 491 / 3e-154 AT5G07280 1377 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G169600 [exp] 490 / 3e-154 AT1G55610 1500 / 0.0 BRI1 like (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009213 [exp] 1397 / 0 AT5G53890 1258 / 0.0 phytosylfokine-alpha receptor 2 (.1) Lus10005403 [exp] 1383 / 0 AT5G53890 1248 / 0.0 phytosylfokine-alpha receptor 2 (.1) Lus10016395 [exp] 832 / 0 AT1G72300 1170 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10019722 [exp] 830 / 0 AT1G72300 1189 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10033533 [exp] 493 / 1e-155 AT4G39400 1492 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10020835 [exp] 479 / 2e-150 AT4G39400 1486 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10038726 [exp] 468 / 9e-147 AT2G01950 1501 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Lus10039132 [exp] 454 / 2e-141 AT2G01950 1503 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Lus10005784 [exp] 430 / 3e-132 AT4G39400 1361 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10006817 [exp] 430 / 4e-132 AT4G39400 1356 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.001G398500.2 pacid=42791924 polypeptide=Potri.001G398500.2.p locus=Potri.001G398500 ID=Potri.001G398500.2.v4.1 annot-version=v4.1 ATGGCGATGGTGGAGACTGCTCCAATGACTTTCCTCAGATCGGTGTTCTTTGCTTGCTTTCTTTGTTCATCTTGGGGTCTCAAAACCACAACTCAATCCT GTGATCCAAATGATATGCGGGCCCTGAAGGAATTTGCAGGAAAGCTCACGAATGGGTCCATCATAACATCATGGTCCAGCAAGACTGACTGCTGTCAATG GGAAGGGGTTGTATGTCGAAGTAATATCAATGGCTCAATTCACAGCAGGGTTACCATGCTGATTCTGTCCAAAATGGGTCTTCAAGGGTTAATTCCGCCC TCCTTGGGCCGCTTAGATCAGCTGAAATCAGTTAATCTCTCTTTCAATCAACTCAGTGGTGGATTGCCTTCGGAGCTCTCGAGCTTGAAGCAGTTGGAGG ATCTTGATTTGAGCCATAACTTGCTATCAGGACAAGTTTCAGGGGTGCTTTCTCGTTTGTTATCCATTCGGACACTGAACATTTCCAGCAATCTGTTCAA GGAAGACTTGCTTGAGCTTGGAGGATACCCAAATCTTGTTGCGTTCAACATGAGCAACAATTCGTTCACTGGTCGAATCAGTTCTCAAATTTGCAGCTCC TCTGAAGGGATTCAGATTCTTGATTTATCTGCGAACCATCTCGTGGGCGATCTTGAAGGCTTGTTCAATTGCAGCAGATCTCTTCAACAATTGCATTTGG ACTCCAATTCACTTTCAGGCTCTCTCCCTGATTTTTTATACTCAATGTCAGCTTTGCAGCACTTCTCTATCCCCAACAACAATTTCTCTGGCCAGTTAAG CAAGGAAGTGAGTAAGCTCTTTAATCTTAAAAACCTGGTTATTTATGGAAACCAGTTTTCAGGCCATATACCAAATGCATTTGTCAACCTTACATATCTA GAACAATTTGTTGCCCATTCAAATATGTTGTCTGGACCTTTGCCTTCAACACTGTCATTCTGCTCAAAGCTTCACATTCTTGACCTTAGAAACAATTCTT TAACTGGTCCAATTGATCTTAATTTCAGTGGAATGCCTAGTCTTTGTACACTTGATCTTGCCTCTAATCACCTTTCTGGGCCACTTCCAAATTCTCTATC TGTTTGCCGCGAATTGAAGATCTTGAGCCTGGTTAAGAATGAATTAACCGGAAAAATCCCCGAGAGTTTCGCAAATCTCTCATCACTTTTGTTTCTCTCA TTGTCCAACAATAGTTTTGTGGACTTATCTGGGGCACTTACAGTACTGCAGCAATGCCAAAATCTCTCCACTCTTATCCTCACAAAGAACTTCGTTGGTG AGGAAATTCCCAGAAATGTAAGTGGTTTCCGGAATTTAATGGTCTTAGCATTTGGAAATTGTGCTCTCAAAGGCCAAATCCCAGTTTGGCTGTTGAGATG CAGGAAGTTAGAAGTTCTTGATTTGTCTTGGAATCATCTGGATGGAAGTATTCCTTCTTGGATTGGCCAGATGGAGAATTTGTTTTACCTGGACTTCTCA AATAACTCCCTAACTGGAGAGATCCCCCTAAGTTTGACTCAGCTAAAGAGCCTCGCAAACAGCAGTTCACCCCATCTAACTGCCTCTTCTGGTATTCCTC TATATGTAAAGCGAAACCAGAGTGCTAGTGGTTTGCAGTACAACCAAGCCTCAAGTTTCCCTCCTTCAATATTGTTGAGCAACAATAGAATAACTGGGAC AATTCCACCTGAAGTTGGAAGGCTGCAAGACCTCCATGTCTTTGATTTGAGCAGGAACAACATTACGGGGACCATACCTAGCTCCTTTTCTCAGATGGAA AACCTGGAAGTTTTAGATTTGTCATCCAACAATCTGTATGGGTCAATCCCCCCATCGCTTGAGAAGCTGACATTCCTGTCGAAGTTTAGTGTGGCTAATA ATCACTTGAGGGGACAAATTCCCAGCGGAGGGCAGTTCTATAGCTTTCCTAGCTCAAGCTTTGAGGGTAATCCGGGACTCTGTGGGGTAATAGTCTCTCC CTGTAATGTCATTAATAATATGATGAAGCCTGGTATCCCATCTGGTTCAGACAGTAGTAGATTTGGTCGAGGCAATATTCTTAGCATAACAATCACTATA GTAGTTGGGCTTGCGCTGGTCCTCGCTGTTGTTTTGCACAAGATGTCAAGGAGGAATGTGGGGGATCCTATTGGTGATTTGGAGGAGGAAGTCAGTCTTC CGCACAGGTTATCTGAAGCTCTCAGGTCTTCCAAGTTGGTGCTTTTTCAGAATTCTGATTGCAAAGACCTCACAGTTCCAGATTTGTTGAAATCAACAAA TAACTTCAACCAAGCAAACATCATTGGTTGTGGTGGATTCGGCCTGGTTTACAAAGCCAACCTTCCCAACGGTACAAAAGCTGCAATCAAGAGGCTTTCT GGGGATTGTGGTCAGATGGAACGAGAATTTCAAGCTGAAGTGGAAGCTCTCTCAAGGGCTCAACACAAAAACCTTGTTTCTCTTCAAGGTTATTGTAGGC ATGGTAATGACAGATTATTGATTTACTCTTACATGGAAAATGGAAGCTTGGATTATTGGCTGCATGAATCTGTTGATGGCGGCTCAGTACTTAAATGGGA GGTGAGACTCAAGATAGCTCAAGGAGCAGCTTGTGGGTTAGCATATCTGCACAAAGTTTGCGAGCCACATATAGTTCACCGAGATGTGAAATCGAGCAAC ATACTTCTAGACGAGAAATTTGAAGCTCACTTGGCTGATTTTGGTCTCTCAAGGCTACTTTGTCCTTACGATACTCATGTGACAACAGATTTGGTAGGTA CATTAGGTTATATACCTCCTGAATATAGCCAAACATTGATGGCAACATGCAGGGGTGATGTTTACAGTTTTGGTGTTGTTCTTCTTGAACTTCTTACCGG TAGAAGGCCCGTGGAAGTTTGCAAAGGAAAAAACTGCAGAAATTTGGTTTCCTGGCTGTTTCAGATGAAGTCCGAGAAAAGGGAGGCAGAGATTATAGAC TCAGCAATTTGGGGTAAAGATCGTCAGAAACAGCTGTTTGAAATGCTCGAAATTGCATGCAGATGCTTAGACCAAGATCCTAGGAGGAGACCCCTTATCG AAGAAGTTGTTTCATGGCTTGATGGTATTGGATTCCAAGCTGCTCAACAATGA
AA sequence Show only first row Show all	>Potri.001G398500.2 pacid=42791924 polypeptide=Potri.001G398500.2.p locus=Potri.001G398500 ID=Potri.001G398500.2.v4.1 annot-version=v4.1 MAMVETAPMTFLRSVFFACFLCSSWGLKTTTQSCDPNDMRALKEFAGKLTNGSIITSWSSKTDCCQWEGVVCRSNINGSIHSRVTMLILSKMGLQGLIPP SLGRLDQLKSVNLSFNQLSGGLPSELSSLKQLEDLDLSHNLLSGQVSGVLSRLLSIRTLNISSNLFKEDLLELGGYPNLVAFNMSNNSFTGRISSQICSS SEGIQILDLSANHLVGDLEGLFNCSRSLQQLHLDSNSLSGSLPDFLYSMSALQHFSIPNNNFSGQLSKEVSKLFNLKNLVIYGNQFSGHIPNAFVNLTYL EQFVAHSNMLSGPLPSTLSFCSKLHILDLRNNSLTGPIDLNFSGMPSLCTLDLASNHLSGPLPNSLSVCRELKILSLVKNELTGKIPESFANLSSLLFLS LSNNSFVDLSGALTVLQQCQNLSTLILTKNFVGEEIPRNVSGFRNLMVLAFGNCALKGQIPVWLLRCRKLEVLDLSWNHLDGSIPSWIGQMENLFYLDFS NNSLTGEIPLSLTQLKSLANSSSPHLTASSGIPLYVKRNQSASGLQYNQASSFPPSILLSNNRITGTIPPEVGRLQDLHVFDLSRNNITGTIPSSFSQME NLEVLDLSSNNLYGSIPPSLEKLTFLSKFSVANNHLRGQIPSGGQFYSFPSSSFEGNPGLCGVIVSPCNVINNMMKPGIPSGSDSSRFGRGNILSITITI VVGLALVLAVVLHKMSRRNVGDPIGDLEEEVSLPHRLSEALRSSKLVLFQNSDCKDLTVPDLLKSTNNFNQANIIGCGGFGLVYKANLPNGTKAAIKRLS GDCGQMEREFQAEVEALSRAQHKNLVSLQGYCRHGNDRLLIYSYMENGSLDYWLHESVDGGSVLKWEVRLKIAQGAACGLAYLHKVCEPHIVHRDVKSSN ILLDEKFEAHLADFGLSRLLCPYDTHVTTDLVGTLGYIPPEYSQTLMATCRGDVYSFGVVLLELLTGRRPVEVCKGKNCRNLVSWLFQMKSEKREAEIID SAIWGKDRQKQLFEMLEIACRCLDQDPRRRPLIEEVVSWLDGIGFQAAQQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53890		AtPSKR2	phytosylfokine-alpha receptor ...		Potri.001G398500 [exp]	0	1
AT3G25500		AHF1, AFH1, ATF...	ARABIDOPSIS THALIANA FORMIN HO...		Potri.014G174700 [exp]	1.73	0.7539
AT5G01030			Protein of unknown function (D...		Potri.006G093600 [exp]	4.24	0.7382
AT2G38440		ITB1, DIS3, SCA...	IRREGULAR TRICHOME BRANCH1, S...		Potri.006G105800 [exp]	7.21	0.7445	WAVE4.1
AT5G53460		GLT1	NADH-dependent glutamate synth...		Potri.012G011700 [exp]	8.48	0.6528	Pt-GLT1.3
AT3G02630			Plant stearoyl-acyl-carrier-pr...		Potri.008G077900 [exp]	10.19	0.7178
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.016G138700 [exp]	12.64	0.7089
AT5G65950			unknown protein		Potri.011G144700 [exp]	12.76	0.7621
AT1G20560		AAE1	acyl activating enzyme 1 (.1.2...		Potri.002G010600 [exp]	13.41	0.7393
AT5G04550			Protein of unknown function (D...		Potri.006G117000 [exp]	13.49	0.6629
AT2G18890			Protein kinase superfamily pro...		Potri.018G091200 [exp]	16.61	0.6687

Compare expression of checked genes

Potri.001G398500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.