Plant FIBer expression Database

Potri.001G398600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G15290 447 / 6e-160 3-hydroxyacyl-CoA dehydrogenase family protein (.1)
AT4G29010 120 / 3e-30 AIM1 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1)
AT3G06860 115 / 1e-28 ATMFP2, ATMPF2, MFP2 multifunctional protein 2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G082900
[exp]
137 / 3e-36 AT4G29010 1094 / 0.0 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1)
Potri.008G220400
[exp]
110 / 4e-27 AT3G06860 1161 / 0.0 multifunctional protein 2 (.1)
Potri.010G011900
[exp]
110 / 7e-27 AT3G06860 1154 / 0.0 multifunctional protein 2 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020828
[exp]
453 / 2e-162 AT3G15290 465 / 4e-167 3-hydroxyacyl-CoA dehydrogenase family protein (.1)
Lus10012681
[exp]
446 / 2e-159 AT3G15290 462 / 5e-166 3-hydroxyacyl-CoA dehydrogenase family protein (.1)
Lus10043224
[exp]
119 / 7e-30 AT4G29010 1063 / 0.0 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1)
Lus10011102
[exp]
119 / 1e-29 AT4G29010 1043 / 0.0 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1)
Lus10006502
[exp]
109 / 3e-27 AT3G06860 670 / 0.0 multifunctional protein 2 (.1)
Lus10037495
[exp]
111 / 4e-27 AT3G06860 1170 / 0.0 multifunctional protein 2 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0106 6PGD_C PF00725 3HCDH 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
CL0063 NADP_Rossmann PF03446 NAD_binding_2 NAD binding domain of 6-phosphogluconate dehydrogenase
Representative CDS sequence
>Potri.001G398600.2 pacid=42787592 polypeptide=Potri.001G398600.2.p locus=Potri.001G398600 ID=Potri.001G398600.2.v4.1 annot-version=v4.1
ATGACGGAGATCAAGGCTGTAGGCGTGGTGGGCAGTGGCCAAATGGGCTCTGGTATAGCCCAACTCGCCGCCGTACACGGGCTCGATGTGTGGCTGCTTG
ACACGGATCCCGCTGCTCTCTCTAGAGCCACAAAGTCTATCACCTCTAACATCCACCGTCTCATCTCCAAAGGCCAACTCTCCCAGGCTGCAGGTAACGA
TGCATTGGGCCATTTACGGTGTAGCTCAAATTTAGAAGAGCTGCGTATGGCAGATATTGTCATTGAAGCTATCGTGGAATCCGAAGATGCGAAGAAAACA
TTATTCCTTGAACTAGATAGGATAGCAAAAAGTTCTGCCATTTTGGCATCCAATACAAGTTCCATCTCCATTACCCGCCTAGCATCTGCGACTAGCAGGC
CACGCCAGGTGATTGGCATGCATTTCATGAATCCTCCTCCTATAATGAAACTGGTTGAGATTGTACGCGGTGCAGACACATCAGACAATACATTTTATGC
AACCAAGGCATTGGCAGAGAGGTTTGGCAAGACAGTGATATGCTCTCAAGATTTTTCAGGTTTCGTTGTAAACCGGATCTTAATGCCAATGATAAATGAA
GCATTTTATGCTCTCTATACAGGAGTGGCAACAAAGGAGGATATTGATACAGGAATGAAGTTAGGAACGAACCACCCAATGGGTCCTTTACAACTTGCAG
ATTTCATTGGACTGGATGTATGCCTGTCGATAATGAAAGTTCTTCAGACTGGCTTAGGGGACAATAAATATGCTCCATGTCCGCTTCTTGTGCAGTTTGT
TGATGCAGGTCGTCTTGGACGAAAACGTGGTATTGGTGTCTATGACTATCGTGCAGCTGAGCAAGTAAAACGCTCTGCTCGACTTTGA
AA sequence
>Potri.001G398600.2 pacid=42787592 polypeptide=Potri.001G398600.2.p locus=Potri.001G398600 ID=Potri.001G398600.2.v4.1 annot-version=v4.1
MTEIKAVGVVGSGQMGSGIAQLAAVHGLDVWLLDTDPAALSRATKSITSNIHRLISKGQLSQAAGNDALGHLRCSSNLEELRMADIVIEAIVESEDAKKT
LFLELDRIAKSSAILASNTSSISITRLASATSRPRQVIGMHFMNPPPIMKLVEIVRGADTSDNTFYATKALAERFGKTVICSQDFSGFVVNRILMPMINE
AFYALYTGVATKEDIDTGMKLGTNHPMGPLQLADFIGLDVCLSIMKVLQTGLGDNKYAPCPLLVQFVDAGRLGRKRGIGVYDYRAAEQVKRSARL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G15290 3-hydroxyacyl-CoA dehydrogenas... Potri.001G398600
[exp]
0 1
AT2G42500 PP2A-3, PP2A-4 protein phosphatase 2A-3 (.1.2... Potri.003G217900
[exp]
4.24 0.7944 Pt-PP2.3
AT1G28120 unknown protein Potri.001G067400
[exp]
7.74 0.8228
AT5G58005 Cytochrome c oxidase, subunit ... Potri.018G109400
[exp]
16.85 0.8149
AT3G55005 TON1B tonneau 1b (TON1b) (.1) Potri.010G215500
[exp]
18.97 0.8051
AT4G27690 VPS26B vacuolar protein sorting 26B (... Potri.006G081300
[exp]
21.56 0.7778
AT4G15830 ARM repeat superfamily protein... Potri.008G221900
[exp]
27.92 0.8118
AT1G64230 UBC28 ubiquitin-conjugating enzyme 2... Potri.003G136200
[exp]
29.66 0.7707 Pt-UBC.9
AT3G13330 PA200 proteasome activating protein ... Potri.011G167650
[exp]
45.00 0.7509
AT4G39630 unknown protein Potri.005G082500
[exp]
61.93 0.7886
AT2G25280 unknown protein Potri.018G023700
[exp]
73.45 0.7501

Potri.001G398600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.