Plant FIBer expression Database

Potri.001G398900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G53860 673 / 0 EMB64, EMB2737 EMBRYO DEFECTIVE 64, embryo defective 2737 (.1.2.3.4.5)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G118000
[exp]
787 / 0 AT5G53860 695 / 0.0 EMBRYO DEFECTIVE 64, embryo defective 2737 (.1.2.3.4.5)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009197
[exp]
598 / 0 AT5G53860 593 / 0.0 EMBRYO DEFECTIVE 64, embryo defective 2737 (.1.2.3.4.5)
PFAM info
Representative CDS sequence
>Potri.001G398900.1 pacid=42793685 polypeptide=Potri.001G398900.1.p locus=Potri.001G398900 ID=Potri.001G398900.1.v4.1 annot-version=v4.1
ATGTCAAGAGGAACAGACCGTCTGATAAAGAGTGCGAAGCAATTCGCTGACTTACAATACAAGCTCTTCACTGCTCGATATGGACAACAATTGATTGACA
TTTTTGAGTTCCCAATAAAACTTGTCTTGTCTCCTTTCACTCTCGCCTTTGACATTGCGGGCTCTGCTCCTCGTGGGTTTGGTGTCCCTGAACTAATCTC
CAAGCTCTCCTATGCTTCTATCTTTGCTATTGCTACTTTGGGGACCTATGATATTGCCTTGGAGATGGGAAAGAAAGTGATATGTCAAAGGAATTGTCAG
ACTTGCAATGGATGGCAGGCATTACAATGTAATATGTGCAAAGGAGTAGGGAAGGTTCATTATCAAGTAAAAAATTACACCTTGAGAAGTGGTGAGAAGG
CTACAGCTGAATGCATTGCAGATGCCATTGCTGACAACCGGGCTGAGCTGGTGCACCTTCCCTCCTCCATGGATCTTAACATGCCTTTGCCATCTAAGGA
CTGTCCAACTTGTGATGGAACAGGTGTAATGAGCTGCCCTGAATGCAAAAACAAATTACAAGTCAGGATCTCTGCTGATGATATAATGGAGCCCCCATGG
CAAGCCTACAATGTCCTGAGAAAGATGGAGTATCCCTATGAGCATATAGTTGATAGCATGAGAGACCCCAGCATTGCTGCATTTTGGTTGTTTTCCTTTC
CTGAGATTATGGGTGGCTTCAACTATGATGGTGATGTCAAACAGAAAATTTGGTGGCAATACAAGGAATCAATGAGGTATGATCAACTACGAGATATGGT
AGCCAAGCGAAATCCTGGTTGGGAGCACTTGCAGGAAGCCCTGATCTCCATAGATCCTGTTCGTGCCAGGGATGATCCTGTTGTTGTGAAAAATGTCCCA
TACTACAAAGCCAAGAAGACACTGGAGGCAGAGGTCATGAAACTTGATCCACCACCTCGGCCACAAAATTGGGGTGAGCTGGACCTTCCACTAAATGCAT
CATCATGGAACGAGGAGGATCTTAAAAAACCAGAAAAGTTCTATGAGATGACTGTTCTTCTTAATGCACAGAGAGAAATTGCTGATAAAATTTTGGATTC
ACAATGGGAAACTAAATGGCGTCAAGAAAAGTTGAATGAAATGTTGGAGGAGAAGGTGCGGCCATACATTCAAAACATCAGCAATGGTGCCCTTCCCCGT
CCTATCCTAATACAATCACAGAAGCAGGATAAAAAGAGGAGGCAGCGAAGATGGTGGTTTTTCTGA
AA sequence
>Potri.001G398900.1 pacid=42793685 polypeptide=Potri.001G398900.1.p locus=Potri.001G398900 ID=Potri.001G398900.1.v4.1 annot-version=v4.1
MSRGTDRLIKSAKQFADLQYKLFTARYGQQLIDIFEFPIKLVLSPFTLAFDIAGSAPRGFGVPELISKLSYASIFAIATLGTYDIALEMGKKVICQRNCQ
TCNGWQALQCNMCKGVGKVHYQVKNYTLRSGEKATAECIADAIADNRAELVHLPSSMDLNMPLPSKDCPTCDGTGVMSCPECKNKLQVRISADDIMEPPW
QAYNVLRKMEYPYEHIVDSMRDPSIAAFWLFSFPEIMGGFNYDGDVKQKIWWQYKESMRYDQLRDMVAKRNPGWEHLQEALISIDPVRARDDPVVVKNVP
YYKAKKTLEAEVMKLDPPPRPQNWGELDLPLNASSWNEEDLKKPEKFYEMTVLLNAQREIADKILDSQWETKWRQEKLNEMLEEKVRPYIQNISNGALPR
PILIQSQKQDKKRRQRRWWFF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G53860 EMB64, EMB2737 EMBRYO DEFECTIVE 64, embryo de... Potri.001G398900
[exp]
0 1
AT5G26830 Threonyl-tRNA synthetase (.1) Potri.010G096500
[exp]
1.00 0.9578 Pt-THRRS.2
AT1G16170 unknown protein Potri.001G038750
[exp]
2.44 0.9434
AT3G10980 SAG20, WI12, AT... PLAC8 family protein (.1) Potri.008G075300
[exp]
3.16 0.9315
Potri.007G010000
[exp]
3.87 0.9330
AT1G05910 cell division cycle protein 48... Potri.017G031400
[exp]
4.24 0.9263
AT4G16710 glycosyltransferase family pro... Potri.013G025600
[exp]
4.47 0.9169
AT1G77260 S-adenosyl-L-methionine-depend... Potri.002G077100
[exp]
6.00 0.9056
AT4G38280 unknown protein Potri.004G205200
[exp]
6.32 0.8865
AT1G16170 unknown protein Potri.001G040300
[exp]
6.32 0.9325
AT4G31150 endonuclease V family protein ... Potri.018G001000
[exp]
6.63 0.9016

Potri.001G398900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.