Plant FIBer expression Database

Potri.001G399000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G53850 792 / 0 haloacid dehalogenase-like hydrolase family protein (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G118132
[exp]
531 / 0 AT5G53850 425 / 1e-147 haloacid dehalogenase-like hydrolase family protein (.1.2.3)
Potri.011G118066
[exp]
313 / 2e-105 AT5G53850 264 / 8e-88 haloacid dehalogenase-like hydrolase family protein (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009198
[exp]
851 / 0 AT5G53850 766 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1.2.3)
Lus10005542
[exp]
468 / 9e-164 AT5G53850 402 / 1e-138 haloacid dehalogenase-like hydrolase family protein (.1.2.3)
Lus10041928
[exp]
452 / 4e-157 AT5G53850 384 / 5e-131 haloacid dehalogenase-like hydrolase family protein (.1.2.3)
Lus10015966
[exp]
286 / 8e-95 AT5G53850 223 / 5e-72 haloacid dehalogenase-like hydrolase family protein (.1.2.3)
Lus10015967
[exp]
277 / 4e-90 AT5G53850 276 / 2e-91 haloacid dehalogenase-like hydrolase family protein (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0137 HAD PF13419 HAD_2 Haloacid dehalogenase-like hydrolase
Representative CDS sequence
>Potri.001G399000.1 pacid=42791541 polypeptide=Potri.001G399000.1.p locus=Potri.001G399000 ID=Potri.001G399000.1.v4.1 annot-version=v4.1
ATGGCAGCAGCCCCACCAGCAGTGGCAGTGAATGGAGGAGGAATGGCGGCAGCAAAGGTGGCATCACAGGCTTATTTGGAAAGCAAAGCAGTTAAAGACA
CAAGGGTGTTAATAGCTGATCTTTGCAAACAATTCTACACCCTTGGATGGGTTTCTGGGACCGGTGGCAGCATCACCATCAAGGCCCATGATGATTCTAT
CCCTAAGCGCCAACAGCTTATCCTCATGTCCCCTTCTGGGGTGCAGAAGGAGAGAATGGAACCAGAGGACATGTATGTCTTAGCTACAAATGGGTCTATA
TTGTCTTCACCATCTCCGAAACCTTACCCATACAAGCCTCCCAAGTGTTCTGATTGTGCTCCACTTTTCTTGAAGGCATATGACATGCGTAATGCAGGAG
CCGTCATTCACAGTCACGGGATGGAATCCTGTCTTGTAACAATGATCAATCCATTATCAAAAGAATTCCGGATCACTCATATGGAGATGATAAAAGGAAT
TCAAGGCCATGGCTACTATGACGAACTTGTTGTCCCAATAATAGAGAACACTGCCTATGAAAACGAGCTTACAGACTCTCTTGCTAAAGCTATTGAAGCG
TACCCAAAAACCACAGCTGTGCTTGTTCGCAATCATGGCATATATATATGGGGAGACTCATGGATCAGTGCCAAAACCCAGGCTGAATGTTATCACTATC
TGTTTGATGCTGCTATCAAACTTCATCAAATAGGCCTAGATTGGTCTACTCCAAACCATGGCCCGATTCAAAATGTCAAGGTTAAGGCAGGCATGAATAA
TTCAAATAACAGAATTGAACCGTTGCCACGTTGCATTGTACTTGACATTGAGGGAACTACTACTCCAATAACATTTGTTGCTGATGTTCTATTTCCATAT
GCCCGTGATAATGTTGGGAGGCATTTGTCTGCAACATATGATACTGCAGAAACTAAAGATGATATAAATTTGTTGCGCACACAAGTTGAAGATGATTTGG
CACAAGGTGTTGATGGTGCTATTCCTATTCCAACGGATGATGCTGGGAAAGAGGAGGTAATTGCAGCTTTGGTTGCTAATGTGGAAGCGATGATAAAAGC
AGATCGGAAGATCACTGCATTAAAACAATTGCAAGGTCATATATGGAGAACTGGATATGAGAACAATGAGCTGGAAGGAGTGGTGTATGATGACGTTCCA
GAAGCATTGGAGAAGTGGCATGCTTTGGGCATAAAGGTTTACATATATTCTAGTGGAAGCAGGCTGGCACAAAGACTTATTTTTGGAAAGACGAACTATG
GTGACTTGAGAAAATATTTGTCTGGATTCTTTGACACCACAGTGGGGAATAAAAAAGAAACACGCAGTTATATTGAAATCTCAGAGTCACTTGGAGTTGA
TAAACCATCTGACATTTTGTTTGTGACGGATGTTTTTCAAGAAGCTTTTGCTGCAAAAGGAGCAGGTTTGGATGTGATGATTTCTATCCGGCCAGGAAAT
GCACCTCTTCCAGAGAATCACGGTTTCAAGACAATCACCTCCTTCGCTGAAATCTGA
AA sequence
>Potri.001G399000.1 pacid=42791541 polypeptide=Potri.001G399000.1.p locus=Potri.001G399000 ID=Potri.001G399000.1.v4.1 annot-version=v4.1
MAAAPPAVAVNGGGMAAAKVASQAYLESKAVKDTRVLIADLCKQFYTLGWVSGTGGSITIKAHDDSIPKRQQLILMSPSGVQKERMEPEDMYVLATNGSI
LSSPSPKPYPYKPPKCSDCAPLFLKAYDMRNAGAVIHSHGMESCLVTMINPLSKEFRITHMEMIKGIQGHGYYDELVVPIIENTAYENELTDSLAKAIEA
YPKTTAVLVRNHGIYIWGDSWISAKTQAECYHYLFDAAIKLHQIGLDWSTPNHGPIQNVKVKAGMNNSNNRIEPLPRCIVLDIEGTTTPITFVADVLFPY
ARDNVGRHLSATYDTAETKDDINLLRTQVEDDLAQGVDGAIPIPTDDAGKEEVIAALVANVEAMIKADRKITALKQLQGHIWRTGYENNELEGVVYDDVP
EALEKWHALGIKVYIYSSGSRLAQRLIFGKTNYGDLRKYLSGFFDTTVGNKKETRSYIEISESLGVDKPSDILFVTDVFQEAFAAKGAGLDVMISIRPGN
APLPENHGFKTITSFAEI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G53850 haloacid dehalogenase-like hyd... Potri.001G399000
[exp]
0 1
AT3G12290 Amino acid dehydrogenase famil... Potri.011G098600
[exp]
4.00 0.8332
AT5G11720 Glycosyl hydrolases family 31 ... Potri.011G154200
[exp]
6.32 0.7787
AT5G60900 RLK1 receptor-like protein kinase 1... Potri.005G056700
[exp]
10.39 0.8062
AT4G01995 unknown protein Potri.002G194500
[exp]
11.40 0.8532
AT2G39190 ATATH8 Protein kinase superfamily pro... Potri.010G221000
[exp]
12.04 0.8421
AT1G55510 BCDH BETA1, BCD... branched-chain alpha-keto acid... Potri.003G222800
[exp]
14.14 0.8441
Potri.009G125700
[exp]
14.42 0.8157
AT5G63050 EMB2759 embryo defective 2759 (.1.2) Potri.012G088600
[exp]
14.59 0.8498
AT1G78420 RING/U-box superfamily protein... Potri.011G096000
[exp]
16.61 0.8169
AT2G13840 Polymerase/histidinol phosphat... Potri.001G206400
[exp]
17.32 0.8414

Potri.001G399000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.