Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28280 190 / 2e-60 VQ motif-containing protein (.1.2) AT5G53830 177 / 4e-55 VQ motif-containing protein (.1) AT3G15300 172 / 8e-54 VQ motif-containing protein (.1) AT2G33780 115 / 1e-31 VQ motif-containing protein (.1) AT1G80450 60 / 6e-11 VQ motif-containing protein (.1) AT5G08480 58 / 2e-10 VQ motif-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G118200 [exp] 390 / 2e-139 AT1G28280 184 / 6e-58 VQ motif-containing protein (.1.2) Potri.011G053700 [exp] 191 / 3e-60 AT1G28280 213 / 6e-69 VQ motif-containing protein (.1.2) Potri.004G044800 [exp] 179 / 7e-56 AT1G28280 223 / 1e-72 VQ motif-containing protein (.1.2) Potri.004G134200 [exp] 75 / 2e-16 AT5G08480 150 / 1e-46 VQ motif-containing protein (.1.2) Potri.018G016500 [exp] 75 / 2e-16 AT1G80450 67 / 6e-14 VQ motif-containing protein (.1) Potri.006G266700 [exp] 69 / 2e-14 AT1G80450 79 / 1e-18 VQ motif-containing protein (.1) Potri.006G266600 [exp] 69 / 3e-14 AT1G80450 61 / 6e-12 VQ motif-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041929 [exp] 150 / 1e-44 AT1G28280 155 / 7e-47 VQ motif-containing protein (.1.2) Lus10005543 [exp] 148 / 6e-44 AT5G53830 154 / 4e-46 VQ motif-containing protein (.1) Lus10015315 [exp] 139 / 3e-40 AT1G28280 203 / 3e-65 VQ motif-containing protein (.1.2) Lus10025443 [exp] 100 / 3e-26 AT1G28280 154 / 2e-47 VQ motif-containing protein (.1.2) Lus10026247 [exp] 92 / 2e-22 AT1G80450 83 / 5e-20 VQ motif-containing protein (.1) Lus10042423 [exp] 87 / 1e-20 AT1G80450 83 / 6e-20 VQ motif-containing protein (.1) Lus10020092 [exp] 65 / 8e-13 AT1G80450 86 / 5e-21 VQ motif-containing protein (.1) Lus10026897 [exp] 44 / 3e-05 AT1G80450 67 / 4e-14 VQ motif-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05678 [poplar] [flax] VQ VQ motif
Representative CDS sequence Show only first row Show all	>Potri.001G399100.1 pacid=42789906 polypeptide=Potri.001G399100.1.p locus=Potri.001G399100 ID=Potri.001G399100.1.v4.1 annot-version=v4.1 ATGAAAACCTCCACAAGATTTCAAGAAACCAAAAACCCATCTCCTATAAACTCTCCTCGTAGCAATGGAAGCAACAATGGGGTCCAGATTCACGCCCCAC CACTCACTCCAATACCCATCTCCAGATCTGACACTAACCCTTACCCAACAACCTTTGTCCAGGCAGACACTTCTACTTTCAAACAAGTTGTCCAAATGCT CACTGGCTCAACAGAAACAGCAAAGCAGGCCTCCTCAAAAACAACCCAAGATCCGCCAACAACACCAACTCAAACTTCAAGGAGCTACAACATCCCTCCT ATCAAGAACATGCCCAAGAGACAACAAAACAGCTTTAAACTTTATGAAAGAAGAAACAACAGCTTCAAAAACAGTCTCATGATCAACACTTTATTGCCTA GTTTTGCAAATAACTGTAACTCTTCATCGGTTACTGGGTTTTCACCAAGAAACAAGCCGGAGATCTTGTCCCCAAGCTTGCTTGACTTCCCTAGACTTAC CCTTAGCCCTGTGACTCCACTAAATGAAGACCCTTTTAACAAGAGCTCACCTTCTTTAGGGAATTCATCAGAAGAGGAGAGAGCGATAGCAGAGAAAGGT TTTTACTTGCATCCATCACCTATATCTACTCCAAGAGACTCAGAGCCTCAGTTGTTGTCACTTTTTCCTGTAACCTCACCAAGAGTTTCAGGTTCTTCTT CTTGA
AA sequence Show only first row Show all	>Potri.001G399100.1 pacid=42789906 polypeptide=Potri.001G399100.1.p locus=Potri.001G399100 ID=Potri.001G399100.1.v4.1 annot-version=v4.1 MKTSTRFQETKNPSPINSPRSNGSNNGVQIHAPPLTPIPISRSDTNPYPTTFVQADTSTFKQVVQMLTGSTETAKQASSKTTQDPPTTPTQTSRSYNIPP IKNMPKRQQNSFKLYERRNNSFKNSLMINTLLPSFANNCNSSSVTGFSPRNKPEILSPSLLDFPRLTLSPVTPLNEDPFNKSSPSLGNSSEEERAIAEKG FYLHPSPISTPRDSEPQLLSLFPVTSPRVSGSSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G28280			VQ motif-containing protein (....		Potri.001G399100 [exp]	0	1
AT1G27850			unknown protein		Potri.010G056200 [exp]	5.09	0.9108
AT1G62990	HD	IXR11, KNAT7	KNOTTED-like homeobox of Arabi...		Potri.001G112200 [exp]	5.19	0.9027	KNAT7.1
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.009G012100 [exp]	8.12	0.9067	PtrFLA14-9,FLA14.9
AT4G17920			RING/U-box superfamily protein...		Potri.001G140900 [exp]	13.49	0.8916
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.013G151432 [exp]	15.65	0.8937
AT1G27920		MAP65-8	microtubule-associated protein...		Potri.001G055100 [exp]	17.43	0.8914
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.012G015032 [exp]	17.49	0.8928
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.004G210600 [exp]	21.90	0.8875
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Potri.019G121200 [exp]	22.49	0.8857	FLA14.11
AT1G28240			Protein of unknown function (D...		Potri.004G044100 [exp]	25.09	0.8876

Compare expression of checked genes

Potri.001G399100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.