Plant FIBer expression Database

Pt-PPI1.4 (Potri.001G399400) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-PPI1.4
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G27500 463 / 2e-156 PPI1 proton pump interactor 1 (.1)
AT3G15340 202 / 7e-57 PPI2 proton pump interactor 2 (.1.2)
AT5G36690 182 / 8e-50 unknown protein
AT5G36780 182 / 8e-50 unknown protein
AT1G20970 132 / 5e-32 unknown protein
AT1G53110 128 / 1e-31 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G119700
[exp]
812 / 0 AT4G27500 431 / 6e-144 proton pump interactor 1 (.1)
Potri.006G191500
[exp]
130 / 3e-31 AT1G20970 309 / 6e-86 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005546
[exp]
501 / 3e-171 AT4G27500 415 / 2e-137 proton pump interactor 1 (.1)
Lus10041932
[exp]
496 / 2e-169 AT4G27500 410 / 4e-136 proton pump interactor 1 (.1)
PFAM info
Representative CDS sequence
>Potri.001G399400.2 pacid=42792192 polypeptide=Potri.001G399400.2.p locus=Potri.001G399400 ID=Potri.001G399400.2.v4.1 annot-version=v4.1
ATGGGTGTTGAGGTTGTGGCACCTGAGAAGGTTCAGGCCCCTATTGACAGTGTAAGTGAAGTAGATGAAACAATTCTGCATGAAAAGGAAAACGTGAAAC
TGGATGAGGTATCAGGACTTACCGAGCCCATACAATTTGGTTCACATGGGGAGGAGCCAGTTAGAGCAGAAGGAAATGATGTTACAGATGCCAACTTGCC
GAAGGATGCCATTGACGAGTGGCCTGCTCCTAAGCAGATCCATTCCTTTTACTTTGTAACGTACCGGCAATATGATGATCCGAAAATAAAATCCAAAATT
GATCAGGCTGATAAGGAGATTCAGAAGAGGAATCTGTCCCGGTTTGAGATTACAGAAGAATTAAAAGCTATAAGGGCGAAACGGGCAGAGTTGGTGAACC
AGGTAAGGACCCTGAAGAATGAGGGTCGACAGTATAAATCGATGTTTGATGAGAAAAAAAAGAAAATAGAGCCTCTGCAGCAGGCACTGGGCAAGCTGCG
TGACACAAATAGTGCTGGTCGAGGTGGTTTATGTTCATCCGAGGAAGAACTTAATGATCTTATCTACAGTTTGCAATACCGCATACAACATGAGAGCATC
CCATTGACAGAGGAGAAGCAAATACTTAGAGAAATCAAACAGTTTGAGGGGACAAGGGAAAAAGTAATTGCTAATGCTGCTATGAGAGCAAAGATTCAGG
ATTCAATGGGTCAGAAAGAAGCCATTCAAGACCAGGTCAAACTTATAGGCGTTGACTTGGATGGTGTAAGGAAGGAACAACAAGTACTTTGGGGAAAAGT
TGACGGCCTAGATGGGAAAGTGAAGGCACTGGATGCTGAAATTAAGACTTTACAGGATGAGTTGACAGCTGTGACCCAGAAGAGGGACAAAGCATATGAA
ACTATTCAGGAACTTCGGAAACAGCGTGATGAGGCAAATGCCAACTTTTACCAATGCCGTATGCTCTTGACCAAAGCCAAAGAACTTGCTGCTAGGAAAG
ATGTACCGGCTCTTGAAGAACTTGCACATGCTGAGGTTGAAAATTTTATGTCCCTCTGGAGCCATAACAAAGCCTTTAGGGATGATTACAAGAAAAGAAT
TTTGCCCTCCCTTGACCGCCGACAAATGAGCAAGGATGGACGAATTAGGAACCCTGATGAGAAGCCATTGGTGATATTGGAGACGCCGAAACTTTCTGAA
CCAGAGCCAGTGGTAAAAGCTATTGCAAAGCGACCGAAAGAAGATCCAAAACCCCCTTCTCAAAAAGATGCTCTACCCCCCCAAAAGGTCCAGAAGGAAA
CTACTAAGACAGAATTGAAGACGACTTCAGAGCACTCTGACATCATTGACAAGGAGGTCTCTGGGTTGGAAAATCTGCAAAAGAATCCTGCAGAAAAGGA
AGTTGATGAAGCGAAATTGAAGGAGATGAAAAGAGAAGAGGAAATAGCAAAAGCTAAGCAAGCCATGGAAAGGAAGAAGAAGCTGGCTGAGAAAGCTGCT
GCAAAAGCAGCTGCAAGAGCTCAAAAGGATGCTGAGAAAAAGCTCAAGGAACGAGAAAAGAAATTAAAGAAGAAGGCTGCAGCTACTGAGCCTGAGGAAC
CTGTCGAAGCAGTTGCAGAGGCAGAACCTGAAATGGATGAAGTGAATGATGAGGTTCCTGTTCCAGTGAAGGAAAAAGTTGGGAAAGAGAATACTGTTAG
GCCTAGGAATCGTCCAAGAGGCCCGGGTTCACTTCCCAAAGTCATCCCGAGGAGGAAAAAGTCAACAAACTATTGGATATGGGCTGCTCCTGCTGCTTTA
GTAGTTCTTTTGTTTCTAGCGCTCGGGTACTACTACTATCTTCTCTGA
AA sequence
>Potri.001G399400.2 pacid=42792192 polypeptide=Potri.001G399400.2.p locus=Potri.001G399400 ID=Potri.001G399400.2.v4.1 annot-version=v4.1
MGVEVVAPEKVQAPIDSVSEVDETILHEKENVKLDEVSGLTEPIQFGSHGEEPVRAEGNDVTDANLPKDAIDEWPAPKQIHSFYFVTYRQYDDPKIKSKI
DQADKEIQKRNLSRFEITEELKAIRAKRAELVNQVRTLKNEGRQYKSMFDEKKKKIEPLQQALGKLRDTNSAGRGGLCSSEEELNDLIYSLQYRIQHESI
PLTEEKQILREIKQFEGTREKVIANAAMRAKIQDSMGQKEAIQDQVKLIGVDLDGVRKEQQVLWGKVDGLDGKVKALDAEIKTLQDELTAVTQKRDKAYE
TIQELRKQRDEANANFYQCRMLLTKAKELAARKDVPALEELAHAEVENFMSLWSHNKAFRDDYKKRILPSLDRRQMSKDGRIRNPDEKPLVILETPKLSE
PEPVVKAIAKRPKEDPKPPSQKDALPPQKVQKETTKTELKTTSEHSDIIDKEVSGLENLQKNPAEKEVDEAKLKEMKREEEIAKAKQAMERKKKLAEKAA
AKAAARAQKDAEKKLKEREKKLKKKAAATEPEEPVEAVAEAEPEMDEVNDEVPVPVKEKVGKENTVRPRNRPRGPGSLPKVIPRRKKSTNYWIWAAPAAL
VVLLFLALGYYYYLL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G27500 PPI1 proton pump interactor 1 (.1) Potri.001G399400
[exp]
0 1 Pt-PPI1.4
AT5G05660 EBI, ATNFXL2 NFX1-like 2, EARLY BIRD, Arabi... Potri.010G188700
[exp]
1.41 0.7507
Potri.003G193100
[exp]
4.00 0.7232
AT3G61415 ASK21 SKP1-like 21 (.1.2) Potri.014G085400
[exp]
4.89 0.6610
AT4G27500 PPI1 proton pump interactor 1 (.1) Potri.011G119700
[exp]
6.92 0.6267
AT5G54430 ATPHOS32 Adenine nucleotide alpha hydro... Potri.001G409100
[exp]
8.36 0.6616
AT5G22070 Core-2/I-branching beta-1,6-N-... Potri.001G215400
[exp]
8.48 0.6859
AT5G06830 unknown protein Potri.006G059500
[exp]
13.74 0.6319
AT4G08180 ORP1C OSBP(oxysterol binding protein... Potri.019G015111
[exp]
13.96 0.6117
AT1G51450 ASH2R, TRO ARABIDOPSIS Ash2 RELATIVE, TRA... Potri.001G256000
[exp]
14.89 0.7299
AT2G30530 unknown protein Potri.013G160100
[exp]
19.79 0.6702

Potri.001G399400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.